PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_119970_ctha.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 363aa    MW: 41902.9 Da    PI: 5.5135
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_119970_ctha.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36431352103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+yei++d+ +++++sws+ g+sfvv+d++ fa+++Lp+ Fkh+nf+SFvRQLn+YgF+k++ ++         weF++++F kg+k+
  Bv5_119970_ctha.t1  43 FLTKTYEIVDDPCTDNIVSWSRGGQSFVVWDPHAFASNLLPRNFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEEFLKGQKQ 124
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Bv5_119970_ctha.t1 125 LLKNIRRRKNS 135
                         ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-6039132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.2E-3439132IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.5E-3839132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNPFYHVKEE YPDSNSSFSG EIPASFPAPQ PREGLHEVGP PPFLTKTYEI VDDPCTDNIV  60
SWSRGGQSFV VWDPHAFASN LLPRNFKHNN FSSFVRQLNT YGFRKIDPDK WEFANEEFLK  120
GQKQLLKNIR RRKNSSNNPY FPQQGGNDPC VELGRFGLDE EVDRLVRDKQ VLMMELVKLR  180
QQQQNTRAYI QAMEQRLQTT EIKQQQMMNF LARAMQNPVF LQQLVQQKEK RKELEEALSK  240
KRRRPIDQGH IKCDLQSGES SSTLGMGYVK VEPLELRGST YGYDHHNHGG VSELEALALE  300
MQGYGRVETE LEEGKRDDGD DKELDEAFWD ELLNERFKAS GDHEDVDVLA DRLRLGYLGS  360
SPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254113518123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229243KRKELEEALSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019105332.10.0PREDICTED: heat stress transcription factor A-2c
RefseqXP_019105333.10.0PREDICTED: heat stress transcription factor A-2c
SwissprotQ9LUH81e-122HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0K9QYB21e-178A0A0K9QYB2_SPIOL; Uncharacterized protein
STRINGXP_010679125.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-113heat shock transcription factor A6B