PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_118590_qxci.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HB-PHD
Protein Properties Length: 867aa    MW: 93771.2 Da    PI: 4.4667
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_118590_qxci.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.42.5e-13728774652
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         ++ +  +++L e F++n+yp+++ +e+LA++lgLt  +V  WF N R
  Bv5_118590_qxci.t1 728 RLDEAVTQRLYESFKENQYPDRQVKEKLANELGLTAHRVDKWFGNAR 774
                         56778899*************************************99 PP
2PHD41.72.7e-14384439151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ Cg+    +e++++lCdg C++ fH++Cl+++l +ee+p g   wlC+ C++k
  Bv5_118590_qxci.t1 384 FCAKCGSkdLSTENDIILCDGsCERGFHQYCLDPPLLTEEIPPGdeGWLCPACDCK 439
                         699***977667********55********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.95E-14374442IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-13381439IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.11382439IPR019787Zinc finger, PHD-finger
CDDcd155043.07E-29384436No hitNo description
PfamPF006281.0E-11384439IPR019787Zinc finger, PHD-finger
SMARTSM002494.6E-11384437IPR001965Zinc finger, PHD-type
PROSITE patternPS013590385436IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.1E-15707774IPR009057Homeodomain-like
SuperFamilySSF466891.2E-12715778IPR009057Homeodomain-like
PROSITE profilePS5007112.924720780IPR001356Homeobox domain
SMARTSM003891.6E-10722784IPR001356Homeobox domain
CDDcd000867.42E-12723774No hitNo description
PfamPF000466.0E-11727774IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MELQTDTVAG EKQAVEVSKN ELRSLDNVLD KPVEMNNATL EGGADASLVF ENVSNSLGGV  60
DVSVNGEQLG LKEKAGSEAG PDNVLDKVVQ VKNVISEGIS LEGVDIENEL KTPGNGVSVN  120
GKQSGVEEKA CSEAGPDNVK LELNVESKDD AVDSSKMEGA RMSLVEQVEN LNNDASRNRG  180
KIVENEGDAC DAQAAPLAEE TGQKGHIVVL GIPATDPNEK TRRGQKPATT AVMSMKKKSP  240
KKASGSGTRV LRSRSKEKSE APEPSVNLEN TKGSTGKRGR KKGKENDGKS DDAYSKMRKH  300
LRYLLHRIHY EQNLLDAYSS EGWRGQSVEK LRPEKELQRA KTDINRSKSK IRDLFQRLDT  360
MAAEGKFPET LYDSEGLIDS EDIFCAKCGS KDLSTENDII LCDGSCERGF HQYCLDPPLL  420
TEEIPPGDEG WLCPACDCKH DCVDLLNDSL NDSQGTKLAF EDSWEKVFPE AVAAGASKEL  480
DDVSGLPSDD SEDNEYNPDG TDDDPNVEGN ESNSDESDSD KSDSSDFSSA SEDLGAIGGG  540
EQNLGLPSED SEDDDYDPDS TKVDEEGVEH ESSGSDFTSA SEDLGAAVSE DGTSDINEQP  600
LPLEPEQDLG ESSPLGGKRC VERLDYKKLY DETYGNVASG SSEDDEDWTD MVATKKRKSS  660
AAKAELVSSL GPSVSADGTS GSVIPRRRGR PKADHQLANG SPAQAPESSR KSSPGGSSSS  720
KKRPPYKRLD EAVTQRLYES FKENQYPDRQ VKEKLANELG LTAHRVDKWF GNARWSFHHH  780
PSRVEASMTR VGSHSNTPQT VACDGGESAM ASDNAAVPIC STPNTEGDQA MLETSKTENS  840
KEGTQTDLRQ KPETPKGVQR KRRKSRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276284KRGRKKGKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678968.10.0PREDICTED: homeobox protein HAT3.1 isoform X1
TrEMBLA0A0K9QSK50.0A0A0K9QSK5_SPIOL; Uncharacterized protein
STRINGXP_010678968.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-111Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain