PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_118270_wwos.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

SBP

Protein Properties

Length: 996aa MW: 110703 Da PI: 5.808

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_118270_wwos.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.6	1.4e-41	141	217	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C adl++ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ Bv5_118270_wwos.t1 141 CQVEDCGADLTKAKDYHRRHKVCEMHSKATKALVANVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQP 217 **************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.9E-34	133	202	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.111	138	215	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-38	139	220	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.4E-30	141	214	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	1.7E-9	733	887	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.09E-9	767	886	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.45E-9	780	887	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MAEFHGIDPS QFRGMVKRGV EWDLNQWNWD GDLFIATPTN FQAKQFIPVV PVSGNSSNTS 60 SSCSDDVHYP IDDGRRELER KRRVIVVEED NLEEPGSLTL KLGGNCFPPV PEGEREVGNW 120 EGSSGKKTKL AAGGSSNRAL CQVEDCGADL TKAKDYHRRH KVCEMHSKAT KALVANVMQR 180 FCQQCSRFHA LQEFDEGKRS CRRRLAGHNK RRRKTQPDTV AGGNSVNDEQ TNSALLMSLL 240 RILSNMHANN KSNQSTDQDL VAQLLRSLAS PSGSHMGKGL HGVSHESQKI INGGIANKNG 300 HSEKMSHFLS NDDMNPPQVI DQHPAPPDSE IPRKGLYADN SKSSEIQAVS SQEPGSSFPM 360 KDSPPAYSEI TAGRMKLNNF DLNDAYVDSD DGMEDLERSP VDGNFVTGSA DYPSWAQQGS 420 HQSSPPQTSG NSDSASAQSP SSSSGEAQSR TDRIVFKLFG KEPGGSPIML RGEILEWLAH 480 SPTDIESYIK PGCIILTVYL RLAESLWEEL CSDLSSCLTR LFDISDDTFW RTGWVYVRVQ 540 NQIAVVHNGH VLLDTSLSLH NSNCSRILSV MPIAVSMDER ARFEVRGFNL SESTTRLLCA 600 MEGKYIDQEA TQESKDDCDF VEEDDEAEHA SIVCSVPNVT GRGFIEVEDP GLSTSFFPFI 660 VAEKDVCSEI RTLESVLGLK KSDEDAYEVN KTLESRRQAL DFINEMGWLL HRSHLKLRLA 720 DLDPNATIFS FRRFTWLMEF SMEHDWCAVV KKLLDVMVAG TVGSGEHPSL KVALLEMGLL 780 HRAVRRNSRS MVELLLEYVP MKFCDEFMSP VDGGKERFLF RPDAQGPAGL TPLHIAAGRD 840 ASEDVLDALL DDPGKIGLDA WKNAQDSTGA TPEDYARMRG HYAYIHMVQR KIQRSLASEH 900 VLDIPVEPSV APRHDGAVSF EVGTSVNQSC KLCDQKKMFM YYRSRVRTSL AYRPTMLSMV 960 GIAAVCVCVA LLFKSMPNVV CLFQPFRWEL LNYGSS

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MAEFHGIDPS QFRGMVKRGV EWDLNQWNWD GDLFIATPTN FQAKQFIPVV PVSGNSSNTS  60
SSCSDDVHYP IDDGRRELER KRRVIVVEED NLEEPGSLTL KLGGNCFPPV PEGEREVGNW  120
EGSSGKKTKL AAGGSSNRAL CQVEDCGADL TKAKDYHRRH KVCEMHSKAT KALVANVMQR  180
FCQQCSRFHA LQEFDEGKRS CRRRLAGHNK RRRKTQPDTV AGGNSVNDEQ TNSALLMSLL  240
RILSNMHANN KSNQSTDQDL VAQLLRSLAS PSGSHMGKGL HGVSHESQKI INGGIANKNG  300
HSEKMSHFLS NDDMNPPQVI DQHPAPPDSE IPRKGLYADN SKSSEIQAVS SQEPGSSFPM  360
KDSPPAYSEI TAGRMKLNNF DLNDAYVDSD DGMEDLERSP VDGNFVTGSA DYPSWAQQGS  420
HQSSPPQTSG NSDSASAQSP SSSSGEAQSR TDRIVFKLFG KEPGGSPIML RGEILEWLAH  480
SPTDIESYIK PGCIILTVYL RLAESLWEEL CSDLSSCLTR LFDISDDTFW RTGWVYVRVQ  540
NQIAVVHNGH VLLDTSLSLH NSNCSRILSV MPIAVSMDER ARFEVRGFNL SESTTRLLCA  600
MEGKYIDQEA TQESKDDCDF VEEDDEAEHA SIVCSVPNVT GRGFIEVEDP GLSTSFFPFI  660
VAEKDVCSEI RTLESVLGLK KSDEDAYEVN KTLESRRQAL DFINEMGWLL HRSHLKLRLA  720
DLDPNATIFS FRRFTWLMEF SMEHDWCAVV KKLLDVMVAG TVGSGEHPSL KVALLEMGLL  780
HRAVRRNSRS MVELLLEYVP MKFCDEFMSP VDGGKERFLF RPDAQGPAGL TPLHIAAGRD  840
ASEDVLDALL DDPGKIGLDA WKNAQDSTGA TPEDYARMRG HYAYIHMVQR KIQRSLASEH  900
VLDIPVEPSV APRHDGAVSF EVGTSVNQSC KLCDQKKMFM YYRSRVRTSL AYRPTMLSMV  960
GIAAVCVCVA LLFKSMPNVV CLFQPFRWEL LNYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-32	131	214	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00060	PBM	Transfer from AT3G60030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678887.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A0J8BDT7	0.0	A0A0J8BDT7_BETVU; Uncharacterized protein
STRING	XP_010678887.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]