PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_117940_xddf.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 61aa MW: 6858.89 Da PI: 9.3573 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.9e-09 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g W++eEde+l++ ++++G g+W+++++ Bv5_117940_xddf.t1 14 KGLWSPEEDEKLYNHITRFGVGCWSSVPKLA 44 678************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-14 | 6 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.61E-9 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.46 | 9 | 61 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.4E-7 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.52E-6 | 17 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MGRHSCCAKQ KLKKGLWSPE EDEKLYNHIT RFGVGCWSSV PKLADLLLPP PSQSNRATNA 60 Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021762853.1 | 2e-25 | transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 5e-21 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A1Q3B373 | 5e-23 | A0A1Q3B373_CEPFO; Myb_DNA-binding domain-containing protein | ||||
TrEMBL | A0A427AQK4 | 4e-23 | A0A427AQK4_ENSVE; Uncharacterized protein | ||||
STRING | XP_010678849.1 | 1e-24 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-23 | myb domain protein 86 |