PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_117230_ahtj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 456aa    MW: 51888.8 Da    PI: 6.8835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_117230_ahtj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-17202248148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd ll+++v+++G + W+ Ia++++ gR +kqc++rw+++l
  Bv5_117230_ahtj.t1 202 KGQWTIEEDRLLIQLVERYGVRKWSQIAQMLN-GRIGKQCRERWHNHL 248
                         799*****************************.*************97 PP
2Myb_DNA-binding53.17.4e-17256296345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          W +eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Bv5_117230_ahtj.t1 256 LWNEEEDRILIKAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 296
                         6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.038197252IPR017930Myb domain
SuperFamilySSF466896.7E-32199295IPR009057Homeodomain-like
SMARTSM007174.5E-16201250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-27203256IPR009057Homeodomain-like
CDDcd001672.95E-15205248No hitNo description
PfamPF139211.2E-18205262No hitNo description
PROSITE profilePS5129421.839253303IPR017930Myb domain
SMARTSM007172.1E-16253301IPR001005SANT/Myb domain
CDDcd001672.77E-13257299No hitNo description
Gene3DG3DSA:1.10.10.601.6E-21257301IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDFDAKYKEN FSSHHLPLFF HENYSKQRDE FAIEEALSSK GNTSFIQDVH PLENFSINAS  60
SSTSNHGLFS IQPNCFDSFE NSPYGFLPSF DLFETKLFGN HAMNNGSLAP FMDNMNQNIG  120
GGGGVGILGH SQMITTPINM LNNSSTQNYN PFSYYELGPP KYRPSDEDSC TTPKAHGTAI  180
SSGLSTTTMV RRGRKKKPNV VKGQWTIEED RLLIQLVERY GVRKWSQIAQ MLNGRIGKQC  240
RERWHNHLRP DIKKDLWNEE EDRILIKAHA EIGNKWAEIA KKLPGRTENS IKNHWNATKR  300
RQYSKRKCRS KYPRQSSLLQ EYIKSLTPET INAGCRKKPP SSGNHPNSLE NTTKSSNDQS  360
GYSNSGSSDR IGPEYDFSEV PDFNFDAQMF EESSIDSLLD YAPNNDEKCN AFGYDHQLMQ  420
ASSQIMNDSE IVFSPIMQSE VKRELDLVEM INQVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-461983023107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678927.10.0PREDICTED: transcription factor MYB98
SwissprotQ9S7L22e-79MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A314Y6B81e-125A0A314Y6B8_PRUYE; Transcription factor MYB98-like
STRINGXP_010678927.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-82myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]