PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_117120_tfkh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 501aa    MW: 57296 Da    PI: 5.4673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_117120_tfkh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-17161207148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT  Ed ll+++v q+G + W++Ia++m  gR +kqc++rw+++l
  Bv5_117120_tfkh.t1 161 KGQWTDKEDSLLKKLVDQHGDRKWALIAEKMV-GRAGKQCRERWHNHL 207
                         799*****************************.*************97 PP
2Myb_DNA-binding55.11.8e-17213255145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W +eE+ +lv a++q+G++ W+ Ia++++ +Rt++++k++w+
  Bv5_117120_tfkh.t1 213 KDAWNEEEERILVAAHEQFGNR-WAEIAKKLP-RRTENSIKNHWN 255
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.343156211IPR017930Myb domain
SMARTSM007176.5E-15160209IPR001005SANT/Myb domain
SuperFamilySSF466892.79E-27160254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-26162215IPR009057Homeodomain-like
PfamPF139212.4E-17164221No hitNo description
CDDcd001678.49E-13164207No hitNo description
SMARTSM007175.9E-17212260IPR001005SANT/Myb domain
PROSITE profilePS5129420.815212262IPR017930Myb domain
CDDcd001671.00E-12215258No hitNo description
Gene3DG3DSA:1.10.10.605.5E-20216260IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MIMEDEGESI SLVSSFCSPP PITAIDRFLL GHGRAAVVNS KTETTTTTTT VTAAIPATID  60
HDYYFGNYAP SSNNNDCNSN LSEFYGVGNN NNNNDNSICP RIITSSMHDI SFANGLFVDE  120
VDESLNTSEL SHEESVRNEE DSLTFQQSWR SKEKKRKVCI KGQWTDKEDS LLKKLVDQHG  180
DRKWALIAEK MVGRAGKQCR ERWHNHLRPD IKKDAWNEEE ERILVAAHEQ FGNRWAEIAK  240
KLPRRTENSI KNHWNATKRR QNSKRKKNMK INNNEFEGGN QPSILQQYIK NKYPCNTTKN  300
PNTTVTPTTS PETNTTPSHP PRSVLTTISG EVENPYTNLD LEPSNDYYYS FPLTIVNPNY  360
HEEIEFMQNF LRATNDVSYG TCVSLHENYD QVKPQEIINT GDHWMMSTKE GSSSSNSNYN  420
TSTSYSDKFL FDLLHGGEAQ QSISYEGRLS SSQYDDDHKE TLILDEAFSW HSTHDQKPKD  480
MDLFEMITST QYSQMNNFSS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-401602613104C-Myb DNA-Binding Domain
1msf_C2e-401602613104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106205.11e-111PREDICTED: transcriptional activator Myb
STRINGXP_010686156.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-58myb domain protein 119