PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_115930_imcm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB_related

Protein Properties

Length: 270aa MW: 29536.7 Da PI: 9.8123

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_115930_imcm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	82	126	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Bv5_115930_imcm.t1 82 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 126 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.113	75	131	IPR017930	Myb domain
SuperFamily	SSF46689	2.77E-16	77	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-16	78	129	IPR006447	Myb domain, plants
SMART	SM00717	9.9E-10	79	129	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	81	125	IPR009057	Homeodomain-like
Pfam	PF00249	6.3E-11	82	126	IPR001005	SANT/Myb domain
CDD	cd00167	5.43E-9	82	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MAKEVTGGEF MLFGVRVVVD SMRKSVSLNN LSQYEHRLDS SSSNDVVPTA AAGYASADDA 60 AVVTHSSNTT AVVSRERKRG VPWTEDEHKL FLLGLQKVGK GDWRGISRNF VKTRTPTQVA 120 SHAQKYYLRR SNLNRRRRRS SLFDITTDSV AASQSNDQQI DNNGVSESSP IQQVSPNSEI 180 SNIRFSSPTA PIYPSTTSYN HETNLVRVSS TSSSNSTLMA DFDLNKKESS SSLSLNLSLS 240 MTSSDLANSR TMAFKVMQGF NNGDCSISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678650.1	0.0	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	1e-58	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A0K9QZ30	1e-103	A0A0K9QZ30_SPIOL; Uncharacterized protein
STRING	XP_010678650.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	2e-48	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]