PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_115730_oaxt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 356aa    MW: 39706.3 Da    PI: 7.4974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_115730_oaxt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-0932611948
                        TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                         Gg +W++++r+ g++R++k+c++rw++y+
  Bv5_115730_oaxt.t1 32 QGGANWSSVPRKTGTKRCGKNCRLRWNNYM 61
                        46668*********99************97 PP
2Myb_DNA-binding41.23.8e-1370110446
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +T++E+e+++++++  G++ W +Ia+ ++ gRt++++k +w++
  Bv5_115730_oaxt.t1  70 FTQQEEERIIKLHAAVGSR-WGLIAHQLP-GRTENDIKIHWNT 110
                         8******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-8865IPR009057Homeodomain-like
PROSITE profilePS500909.222961IPR017877Myb-like domain
SMARTSM007170.261363IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-161569IPR009057Homeodomain-like
PfamPF002493.0E-63160IPR001005SANT/Myb domain
SuperFamilySSF466893.39E-1947120IPR009057Homeodomain-like
PROSITE profilePS5129419.3762116IPR017930Myb domain
SMARTSM007172.3E-1166114IPR001005SANT/Myb domain
CDDcd001674.21E-970112No hitNo description
Gene3DG3DSA:1.10.10.605.8E-1970116IPR009057Homeodomain-like
PfamPF002491.2E-1170110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVKTSCCSKL NVRKGAWVEE KDATNFAYLP KQGGANWSSV PRKTGTKRCG KNCRLRWNNY  60
MRPDLSHEGF TQQEEERIIK LHAAVGSRWG LIAHQLPGRT ENDIKIHWNT KLRKKLTEMG  120
IDPITHKPFS QILADYGNIG GVSRSFDTPK YLGTIRRDLK KVTTTFSLPK PESSSSPSNT  180
FLSDSQVSQN MSSMQNNYAN YSNNSHSLDL LSQLQAISLV TEGPISDTTL LLNNNNYDFF  240
SLPSPKSSSN SSTSACSSIT NYAGQGTNAS ECFSWHEFLL EDAFKPAQNQ AQEQETKLND  300
IGSDFSPMKS YNRNANQVAS LPLSTSSDAS SFLEAMLDQE NDMFLSFPGL MEEPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-21141164105C-Myb DNA-Binding Domain
1msf_C3e-21141164105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678637.10.0PREDICTED: transcription factor MYB35
STRINGXP_010678637.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-57MYB family protein