PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_115060_ggod.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 618aa    MW: 68051.2 Da    PI: 6.3562
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_115060_ggod.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.8e-30300359159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Bv5_115060_ggod.t1 300 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 359
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31285361IPR003657WRKY domain
SuperFamilySSF1182905.1E-27292361IPR003657WRKY domain
PROSITE profilePS5081128.346295361IPR003657WRKY domain
SMARTSM007745.9E-36300360IPR003657WRKY domain
PfamPF031062.7E-26301359IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MEEQGRASTN SSHEENNKKE KDHNHHRKMV ESSPSTNSFN DEAQKSGGEN GKDDGNDNLT  60
PSASENDNNN KVSNGLKQVP IITTEERIQV KHNSPEKREE LESTKAEIGE VMEENQRLKQ  120
YLNQITKDYQ LLQKKLHDIS EQDSKQIKNV ETTIPPLQVL SRYDEDDEEA DLVSLSLGRS  180
SSLDSKKSNI KPSIDTTTSS PNNKRKNVDE EAKERSLDLG LECNKFKASS MVDHPQTLIP  240
SSSTPDNSFD EIKDGGEETW SPSNKVLNKS STSGDDEVVQ QPPMKKARVS VRVRCDTPTM  300
NDGCQWRKYG QKISKGNPCP RAYYRCTVAP SCPVRKQVQR CAEDMSILIT TYEGTHNHPL  360
PVSASAMAST TSAAAYMLLS KSSTSSNPGS HPSTTTMTTP IETNGLNFNI LENNSNPKPF  420
YNFPNPSSYS TTPTHPTITL DLTTTNLPST NQFNRVSSNL TPRNLTFNFS DNNSNNNSNS  480
PLLNWSNGLM SSYGTQSYMN KTQNSSLNIG SSSRPPTSYP TNHNYSSNHD LPDTIAHAAK  540
VLTSDPSFQS ILTATLTSFI SGNNGNVNSG NVGSNTNNPY EGEGNVNSRR FMENIKWGGL  600
NTSSSANSSF QSSSKETH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20287361174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678574.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A0K9R6C41e-159A0A0K9R6C4_SPIOL; Uncharacterized protein
STRINGXP_010678574.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-60WRKY DNA-binding protein 72