PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_114620_racn.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 436aa MW: 48004.2 Da PI: 4.9031

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_114620_racn.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.7e-40	107	167	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Bv5_114620_racn.t2 107 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKSSA 167 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	100	164	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	109	165	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	111	165	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	113	149	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MMDPAFKLFG KTIPVVGEVD GEDFPPYESN DTSNSDLDDK ELAEEAMEME QSGDSAPPPD 60 EDSTNPSIVS NTSDNEKSPD SEKDSEEMDE KESDDPKNSQ QKTLKKPDKI IPCPRCNSMD 120 TKFCYYNNYN VNQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKSSASRY CHITVSEALQ 180 AARLDVSNGV HHPGLKTNGT VLTFGPDNPL CESMSPVLNI GDTKVLNGTP TRNDFHVIDQ 240 VDDRSSGSTV TTTSSMDENA KAGPQGHNLN GFPNQMPCFQ WPYMWNPAVP VQPFCATTFP 300 MSYYPPPPYW NGAMPWNFPW IPPCSPSPGS NPTSPTLGKH SRDGEMLNQN ENGRSSGTRT 360 VLVPKTLRID DPDEAAKSSI WTTLGIKKGD SQSRGGFFNN LQSKKGEEKI HMMDAPLALQ 420 ANPAALSRSM NFQESA

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MMDPAFKLFG KTIPVVGEVD GEDFPPYESN DTSNSDLDDK ELAEEAMEME QSGDSAPPPD  60
EDSTNPSIVS NTSDNEKSPD SEKDSEEMDE KESDDPKNSQ QKTLKKPDKI IPCPRCNSMD  120
TKFCYYNNYN VNQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKSSASRY CHITVSEALQ  180
AARLDVSNGV HHPGLKTNGT VLTFGPDNPL CESMSPVLNI GDTKVLNGTP TRNDFHVIDQ  240
VDDRSSGSTV TTTSSMDENA KAGPQGHNLN GFPNQMPCFQ WPYMWNPAVP VQPFCATTFP  300
MSYYPPPPYW NGAMPWNFPW IPPCSPSPGS NPTSPTLGKH SRDGEMLNQN ENGRSSGTRT  360
VLVPKTLRID DPDEAAKSSI WTTLGIKKGD SQSRGGFFNN LQSKKGEEKI HMMDAPLALQ  420
ANPAALSRSM NFQESA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ911665	0.0	JQ911665.1 Beta vulgaris subsp. vulgaris cultivar SBSI-OT7112 CDF3 Dof zinc finger protein 3.3 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678503.1	0.0	PREDICTED: cyclic dof factor 1
Swissprot	Q8LFV3	3e-97	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	I0C050	0.0	I0C050_BETVU; CDF3 Dof zinc finger protein 3.3 (Fragment)
STRING	XP_010678503.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-79	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]