PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_114550_iote.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

M-type_MADS

Protein Properties

Length: 359aa MW: 40672.2 Da PI: 6.1108

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_114550_iote.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.9	1.1e-22	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gi+KKA+EL +LCd+++ +++fs+tgk Bv5_114550_iote.t2 9 KRLESSSNRQVTYSKRRTGIIKKAKELAILCDIDIVLLMFSPTGK 53 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.231	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-31	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.4E-21	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGRVKLKIKR LESSSNRQVT YSKRRTGIIK KAKELAILCD IDIVLLMFSP TGKPTVFLGE 60 RSNLEQVITK FAQLTPQERA KRKLESLEAL KKTFKKCDHD VNIEEFVASS SQTAEELTNQ 120 MGLLQAQITE AHKRLSCWSN PDKIDNVEHL RQMENSLSES LNLIRLHKEN MGKHQLMSLD 180 CSSQFQNGMH MPLMMGSLQD CQPLSWLSSN ESQQLMLPDD SSFLPHRDMK CTTDASLSGY 240 SGYYGDVKTE IDNARQCENT GQECGTLNEL TTNACMGVQI GEQYPYSPYG NINLPEEKKL 300 MPDNNGVNFQ GNNPIDYQIA GHFDLPRSIY DTRPQPWIPT ALPCPIPMFN ENSYPEPNL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGRVKLKIKR LESSSNRQVT YSKRRTGIIK KAKELAILCD IDIVLLMFSP TGKPTVFLGE  60
RSNLEQVITK FAQLTPQERA KRKLESLEAL KKTFKKCDHD VNIEEFVASS SQTAEELTNQ  120
MGLLQAQITE AHKRLSCWSN PDKIDNVEHL RQMENSLSES LNLIRLHKEN MGKHQLMSLD  180
CSSQFQNGMH MPLMMGSLQD CQPLSWLSSN ESQQLMLPDD SSFLPHRDMK CTTDASLSGY  240
SGYYGDVKTE IDNARQCENT GQECGTLNEL TTNACMGVQI GEQYPYSPYG NINLPEEKKL  300
MPDNNGVNFQ GNNPIDYQIA GHFDLPRSIY DTRPQPWIPT ALPCPIPMFN ENSYPEPNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	8e-14	1	92	1	90	MEF2C
5f28_B	8e-14	1	92	1	90	MEF2C
5f28_C	8e-14	1	92	1	90	MEF2C
5f28_D	8e-14	1	92	1	90	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019105212.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X4
Swissprot	Q7X9I0	1e-109	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A0K9R747	0.0	A0A0K9R747_SPIOL; Uncharacterized protein
STRING	XP_010678493.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-111	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]