PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_111560_tcwd.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 552aa MW: 61010.3 Da PI: 8.7153 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.8e-17 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av + g++Wk+Ia+ ++ R++ qc +rwqk+l Bv5_111560_tcwd.t1 65 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 111 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.6 | 7.8e-20 | 117 | 163 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l Bv5_111560_tcwd.t1 117 KGPWTQEEDEKIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 163 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 55.1 | 1.7e-17 | 169 | 212 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l da++ +G++ W+ Ia+ ++ gRt++ +k++w++ Bv5_111560_tcwd.t1 169 KDAWTLEEELALMDAHRIYGNK-WAEIAKFLP-GRTDNAIKNHWNS 212 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.551 | 60 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 65 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.81E-15 | 66 | 121 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 67 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.87E-13 | 68 | 111 | No hit | No description |
PROSITE profile | PS51294 | 32.332 | 112 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-32 | 114 | 210 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-18 | 116 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-19 | 117 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 117 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-16 | 119 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 167 | 218 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-16 | 168 | 216 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.865 | 168 | 218 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-15 | 169 | 212 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-12 | 171 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MKEMAEGDLK VEECCLENKQ SAAASTSSLV SEGSASVSIK SSGVSSPAAT SPYQRRTTGP 60 IRRAKGGWTP EEDETLRNAV STFKGKSWKK IAEFFPDRSE VQCLHRWQKV LNPELVKGPW 120 TQEEDEKIIE LVARYGPTKW SVIAKSLPGR IGKQCRERWH NHLNPDIKKD AWTLEEELAL 180 MDAHRIYGNK WAEIAKFLPG RTDNAIKNHW NSSLKKKLEF YLATGKLPPV AKNNLQNNAR 240 VTERPTSSGK LMAGSNKESD SSAQTSSCAT DFQKPEDTKT KLDQSSKLQE LGPSSCPADE 300 SADSGVVERS SYIDFRCSNS NYLPLFDRCG SAERAEKNEG VVTPMPHVNS IYGSLYYKPP 360 EDNSCSPSES SIANSSTQPD CSPAPITSQL GFFTPPCVKS NGASVHSTES ILKNAAMTFP 420 NTPSILRKRR AQLQIPHTQN NGKSDEASCK HRCSSSIEQQ SAIHQSGYQE GGLVPTPPSH 480 TSVVTEFCNG KPFNASPPYR LRSKRTAILK SVEKQLEFTE KEKESNATSI DFQFRGNTPI 540 RERISHTKMG VT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-69 | 64 | 218 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-69 | 64 | 218 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. | |||||
UniProt | INDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010678081.1 | 0.0 | PREDICTED: myb-related protein B | ||||
Refseq | XP_010678082.1 | 0.0 | PREDICTED: myb-related protein B | ||||
Swissprot | Q6R032 | 1e-154 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
Swissprot | Q8H1P9 | 1e-154 | MB3R3_ARATH; Transcription factor MYB3R-3 | ||||
TrEMBL | A0A0K9RHV4 | 0.0 | A0A0K9RHV4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678081.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.2 | 1e-145 | myb domain protein 3r-3 |
Publications ? help Back to Top | |||
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