PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_110480_qpat.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | Trihelix | ||||||||
Protein Properties | Length: 886aa MW: 98303.3 Da PI: 8.0315 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64 | 3.2e-20 | 794 | 874 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li +r e+++r++ k +++lWee+s+ + gf+r+p qCk+ w +l ++y++ k ek++ +++p++++++ Bv5_110480_qpat.t1 794 KWKPEEVKKLIMLRGELHDRFQVVKGRMALWEEISSSLLNDGFNRTPGQCKSLWASLVQKYEESKSDEKSK-----KSWPHYQEMD 874 7********************************************************************85.....56*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.1E-67 | 76 | 326 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 2.38E-72 | 77 | 491 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 3.1E-24 | 89 | 286 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 1.9E-10 | 101 | 236 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 1.1E-7 | 430 | 463 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 7.991 | 787 | 851 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-5 | 789 | 853 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.9E-19 | 792 | 876 | No hit | No description |
CDD | cd12203 | 6.18E-22 | 793 | 854 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 886 aa Download sequence Send to blast |
MAAFTALSIC PCSLFYRPNH VKRYISCSVG PSRSLGTNAT KVPRKRPGRL EGASKSMEDS 60 VKRKMEQFYE GSTGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGIMF PDYDEFGVQK 120 IIPDTTFIKR WSHKIEAVII THGHEDHIGA LPWVIRALDP NTPIFSSSFT MELIKKRLKE 180 FGIFVPSRLK VFRTKRRFTA GPFEIEPVRV THSIPDCCGL VMRCSDGTIF HTGDWKIDET 240 PVDGKAFDRV ALEELSKEGV TLMMSDSTNI MSPGRTISES VVADALLRHI SAAKGRVITT 300 QFASNIHRLG SVKAAADATG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA 360 PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDVILY SAKVIPGNES RCMKMFNRIS 420 ELGSTLVMGR NEMLHTSGHA YREELAEVLK IVKPQHFLPI HGELLFLKEH ELLGKSTGIQ 480 HTTVIKNGEM LGVSHLMNRR VLSNGFVSLG KENLQLMYND GDKAFGTSAE LCIDERMKIA 540 TDGIIVISME VLRPHAVEGY TENTLKGKIR ITTRCLWLDK GKLLDALYKA AHAGLSSCPV 600 NCPLSHMERT VSELLRKVVR KYSGKRPEVI AVATENAAAV ISEEVNGRLS GKSHSGFGLS 660 ALKKAFDGHH QRKKSGKVQD EEDDGHLSQD SSSMQLESED NSEFDRLLEK VDKAGSASDI 720 EESSSAESEN SDGIWKSFTG LSTLPTGKQE ERGEISTLLE EYADRSRGGE VNKDESDEES 780 KHSTKRSKST TRNKWKPEEV KKLIMLRGEL HDRFQVVKGR MALWEEISSS LLNDGFNRTP 840 GQCKSLWASL VQKYEESKSD EKSKKSWPHY QEMDTILSNL GDVVNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 7e-86 | 77 | 635 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 7e-86 | 77 | 635 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 7e-86 | 77 | 635 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 7e-86 | 77 | 635 | 19 | 560 | RIBONUCLEASE J |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010677898.1 | 0.0 | PREDICTED: uncharacterized protein LOC104893494 isoform X1 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A0K9QP06 | 0.0 | A0A0K9QP06_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677898.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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