PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_108320_uwng.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 304aa    MW: 35443.4 Da    PI: 7.6136
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_108320_uwng.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix811.6e-2542123186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W kqe+l+Li++r ++e++++++k++k+lWe+v++ ++++gf r+p qCk+kw+nl +ryk   +++  +     ++cp+f++l+
  Bv5_108320_uwng.t1  42 QWGKQETLELINIRGQLETNFSTSKRNKALWESVASSLKQKGFFRTPHQCKSKWKNLVNRYKGKDTSDAVN----GKQCPFFEELH 123
                         7*************************************************************999998873....567*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.5843599IPR017877Myb-like domain
SMARTSM007177.8E-439101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-439101IPR009057Homeodomain-like
PfamPF138376.7E-2341123No hitNo description
CDDcd122037.07E-2242105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRTLATLPSS KTSSDHCDMK PPTTTTSLHS SGSQYQANNN TQWGKQETLE LINIRGQLET  60
NFSTSKRNKA LWESVASSLK QKGFFRTPHQ CKSKWKNLVN RYKGKDTSDA VNGKQCPFFE  120
ELHVVFSERA RNVQQSYMES QQVALQSRKR MKSYSGDQFS DDVSQDDDDD EGDDSYQDGL  180
IRSSNAQKRK TDRKEHLSAG LMCSNSIDIS SSSSIQEMLR GFFLQQQRIE IEWRESMARH  240
QRERELFEHE SQHSMEKLER ERLMLEQAWM EREEQRKIRE EVRAEKRDAL LTSLLNKLIS  300
QENL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A4e-1243113777DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677518.10.0PREDICTED: trihelix transcription factor GT-3b
TrEMBLA0A371F1K11e-91A0A371F1K1_MUCPR; Trihelix transcription factor GT-3b (Fragment)
STRINGXP_010677518.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-24Trihelix family protein