PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_107780_ahot.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 307aa MW: 33914.7 Da PI: 8.1184

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_107780_ahot.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.1e-34	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Bv5_107780_ahot.t1 42 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-32	39	96	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.465	39	99	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.3E-24	42	97	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.15E-16	42	97	IPR009057	Homeodomain-like
Pfam	PF00249	8.0E-10	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	4.9E-20	149	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MERGMGGVYG GGDGGGFPYH HHHHHHHHQS LEGGVLLSRD PKPRLRWTPD LHERFVDAVT 60 KLGGPDKATP KSVLKLMGLK GLTLYHLKSH LQKYRLGQLS KKQSGSQVKT DSTSLKSSYS 120 RYNLHCSEAS TSGTGTGSSS DNYDLGDIPI TEALRCQLEI QNKLHDQLQV QQRLQSRIEA 180 QGKYLQAILC KAQEGISVDM CCPSSSNSCN NNKNNLDNQD SILYSGHVNT KEMKSVFDQI 240 FPDHRHSEGD QQDHKGDLLK IKHEAASSGD YCSLQLNLNN GGTNNPSYDF GGAHGAELEA 300 KLVAYRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-21	42	95	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-21	42	95	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-21	42	95	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-21	42	95	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF773962	3e-43	KF773962.1 Beta vulgaris microsatellite SSR-Unigene57236 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677471.1	0.0	PREDICTED: myb family transcription factor PHL11
Swissprot	C0SVS4	1e-54	PHLB_ARATH; Myb family transcription factor PHL11
STRING	XP_010677471.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-53	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]