PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_105650_hujt.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

SRS

Protein Properties

Length: 386aa MW: 42861 Da PI: 7.7217

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_105650_hujt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	24.8	6.2e-08	61	151	5	94
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklss 93 + +C CGn a+ C ++ C+ CC C+ hv + a r + + ++ ++ +a ++++ + r+ s++ s+ ++ ++++ Bv5_105650_hujt.t1 61 KPKCIKCGNVARSRCPYQSCKSCCSKAQNPCHIHVLKQNSTLADRGASSNSTIPEQQPNEVAAsgPQSKATSLRQ-LSSTFSQFNNVHIPR 150 568********************************7666555555554333333222222222112222222222.344555555555555 PP DUF702 94 a 94 + Bv5_105650_hujt.t1 151 S 151 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.7E-5	63	135	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MAATTSSPVL SNNGSEASGN TGISSPPPSS TTPPSTVKSP SLPTILLQRP EPPKNLRGLN 60 KPKCIKCGNV ARSRCPYQSC KSCCSKAQNP CHIHVLKQNS TLADRGASSN STIPEQQPNE 120 VAASGPQSKA TSLRQLSSTF SQFNNVHIPR SRKPLTRKEA LTVNEWRFAK LKEYKERNVE 180 AENEAFDRYM QNIGLLEEVF DVNSERTDEN VSGMSNPPTT SGEKMEIISE TKVMLRSNPE 240 RINTFRKRIR QTIDQGLRKF QTNDLVDGPS NLDDEDDMTP KTATSMRAGK TSALAELNFK 300 LNRARNEEDL KLCVEMRSNI LGQQNLTLGQ RAENAEVLEK QTVRNHLPST QESDVSLKLV 360 KTTEIDQDLL NSMDSHFSSL EEIEDL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MAATTSSPVL SNNGSEASGN TGISSPPPSS TTPPSTVKSP SLPTILLQRP EPPKNLRGLN  60
KPKCIKCGNV ARSRCPYQSC KSCCSKAQNP CHIHVLKQNS TLADRGASSN STIPEQQPNE  120
VAASGPQSKA TSLRQLSSTF SQFNNVHIPR SRKPLTRKEA LTVNEWRFAK LKEYKERNVE  180
AENEAFDRYM QNIGLLEEVF DVNSERTDEN VSGMSNPPTT SGEKMEIISE TKVMLRSNPE  240
RINTFRKRIR QTIDQGLRKF QTNDLVDGPS NLDDEDDMTP KTATSMRAGK TSALAELNFK  300
LNRARNEEDL KLCVEMRSNI LGQQNLTLGQ RAENAEVLEK QTVRNHLPST QESDVSLKLV  360
KTTEIDQDLL NSMDSHFSSL EEIEDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677206.1	0.0	PREDICTED: uncharacterized protein LOC104892884 isoform X1
TrEMBL	A0A0J8CHZ3	0.0	A0A0J8CHZ3_BETVU; Uncharacterized protein
STRING	XP_010677206.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	9e-90