PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_105300_swfp.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Trihelix

Protein Properties

Length: 372aa MW: 41263.5 Da PI: 9.8646

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_105300_swfp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.7	3.1e-18	30	104	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr 71 +Wt++e+laLi ++++++ +lrr++l+ ++We+v++ + ++ +s+ qC++k+e+l+kry+++k++ + Bv5_105300_swfp.t1 30 CWTQDETLALIHVYQDKWYSLRRRNLRTADWEAVADEVnrrcPDQSPPKSSAQCRHKMEKLRKRYRAEKQRIGAL 104 8*********************************997666677789999****************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.3E-20	29	130	No hit	No description
PROSITE profile	PS50090	6.295	31	91	IPR017877	Myb-like domain
SMART	SM00595	8.4E-5	38	135	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MSSLSPSAGD PTPTPENPPP PVVRKFPAPC WTQDETLALI HVYQDKWYSL RRRNLRTADW 60 EAVADEVNRR CPDQSPPKSS AQCRHKMEKL RKRYRAEKQR IGALPCHNNF VSNRFFPSSS 120 WVFFDLMDAM EVGSGSGSAS GSVSLVVNNN HNHNNNNNPN VNVMKENNGG FVKEEKKKDD 180 LGKYFDEILM GMGKNTGTGS GVKFKVKNHS DRLFDESKYE GYDYDGGTGN GSGFDYGKSG 240 RSFVSGFNKR KVVGGGVGER FGEDSSSKMV LNGSSSSKRG GGMGSGSGSG SRARGGDAVL 300 TEMVASIKML GEGLVRMEKM KMEMMQEIER NRMEMEMKRN EMILESQHNI VNAFVQGFKK 360 HKKGHVNVMQ ID

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MSSLSPSAGD PTPTPENPPP PVVRKFPAPC WTQDETLALI HVYQDKWYSL RRRNLRTADW  60
EAVADEVNRR CPDQSPPKSS AQCRHKMEKL RKRYRAEKQR IGALPCHNNF VSNRFFPSSS  120
WVFFDLMDAM EVGSGSGSAS GSVSLVVNNN HNHNNNNNPN VNVMKENNGG FVKEEKKKDD  180
LGKYFDEILM GMGKNTGTGS GVKFKVKNHS DRLFDESKYE GYDYDGGTGN GSGFDYGKSG  240
RSFVSGFNKR KVVGGGVGER FGEDSSSKMV LNGSSSSKRG GGMGSGSGSG SRARGGDAVL  300
TEMVASIKML GEGLVRMEKM KMEMMQEIER NRMEMEMKRN EMILESQHNI VNAFVQGFKK  360
HKKGHVNVMQ ID

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021768524.1	1e-137	trihelix transcription factor ASIL2-like
TrEMBL	A0A0K9QYJ4	1e-125	A0A0K9QYJ4_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-28	Trihelix family protein