PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_105170_axfy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 548aa    MW: 61086.1 Da    PI: 5.8021
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_105170_axfy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Bv5_105170_axfy.t1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11546No hitNo description
CDDcd002027.45E-16651No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003207.2E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139196.3E-8286372IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RVDPDDYEDH  60
RVARVKTISL KKRDDKLNKR KLSYENMMDG GFTPDYSPGF QKNIDEDTSN RSSSGSAISN  120
SESCAQFGSA DASELTGPAQ SVVWDALVPS RKRTCVTRAK QSSVEKLTKD LYTILHEQAS  180
HLSVSSEEDL LYESEAPMVS VEIGHGSVLI RHPSSFAREE ESEASSLSVE NKLCRADDGY  240
STPASMLLLN DSKSMSRSSL GTEKFRKLNG EIMQLEQVKR ETYDHEKFQI LWNHDSPLCH  300
IDLTEIVNSD VFCSHLTDEE QQDLLKYLPT IDISTDSDSL GSIFTSMHLK ENLSSFQQLL  360
GDGVFDTSFS GVQTEDCKVL KRLAMSNMTK CKWVEYYNML KDKRTKESTG ESVRTSEANC  420
SFSVNQFNAK RSREGQNRLW PETKSTTKNP KRVLLKADCK SKQTLPNEGS CFTPAPRNLF  480
TFPSNGSSLM LDSYQFDDES SDQDLLLDVP SNGSFPQAEA ELLCPASSYA SQQASASSSS  540
IPLSHFRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677131.10.0PREDICTED: GATA transcription factor 26
SwissprotQ8W4H11e-141GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0K9R9670.0A0A0K9R967_SPIOL; Uncharacterized protein
STRINGXP_010677131.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-134GATA transcription factor 26