PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_104890_chgw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 348aa    MW: 38691.1 Da    PI: 6.7898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_104890_chgw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20183233255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ kl+g
  Bv5_104890_chgw.t1 183 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTYDTAVEAARAYDRAAFKLRG 233
                         7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32182242IPR001471AP2/ERF domain
PfamPF008473.3E-14183233IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-23183243IPR016177DNA-binding domain
PROSITE profilePS5103224.764183241IPR001471AP2/ERF domain
SMARTSM003807.8E-39183247IPR001471AP2/ERF domain
PRINTSPR003671.8E-13184195IPR001471AP2/ERF domain
CDDcd000184.65E-26191241No hitNo description
PRINTSPR003671.8E-13223243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MALSDESSAL EFIKSHLFSE LSPIGGGFSF INNYYANNNT TNFVFNQCNF GFEDPKPELS  60
ISKSNSNSNS LSSQNSLSSS STSFLFEEQV IPTSIKEEQA SDFDFDFDFD VDFTKFDPIS  120
SPSPTFSGGS KSKFRERKPA MKIAVPAPAK KFEVVEFVPE STQRVSANES TQRVNSEEET  180
RRHYRGVRRR PWGKYAAEIR DPNKRGSRVW LGTYDTAVEA ARAYDRAAFK LRGSKAILNF  240
PLEVCNLVAE DSSTTVAASV CGGSDGGRKR KEVEKVKKTE IVETKKVKTE NTCKNKTTSF  300
EEMGPLTPSS WTAFWDVDVK TENGVFNVPP LSPLSPHPSF GYPQLAVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29182244163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677102.10.0PREDICTED: ethylene-responsive transcription factor 5
TrEMBLA0A0K9RZH71e-102A0A0K9RZH7_SPIOL; Uncharacterized protein
STRINGXP_010677102.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ethylene responsive element binding factor 5