PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_104430_syky.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 283aa    MW: 32511.6 Da    PI: 4.1069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_104430_syky.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06221265655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +++ r RR++i ++ +eL +l+P  +      Kl+ ae+ + A +Y+k +q
  Bv5_104430_syky.t1 221 SKAARERRRKITEKTHELGKLIPGgN------KLNTAEMFQAASNYVKFMQ 265
                         677899*****************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.503215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-10216278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-9219272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-7221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-7223268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MALDWQNPNY FLNQINPFQQ QQQQQPFQFQ NPDDILLSPE LLCFDPLPPT LFEFDQPLFD  60
PPSLQQQPFD FYNHDHHDFI IHNDNNNDNS PFYNVDFQPP VFLPTEDFFT FDEIDEIDNY  120
STQFLPLSNN KKQKLSASVP ASDGFFTDGF AAVPEFYNGD DFNHNGDYCF GNGDCFVNGD  180
YFVNGDYFGN GDCFGKFNEG CGENYDNENN NNKVKVVSAQ SKAARERRRK ITEKTHELGK  240
LIPGGNKLNT AEMFQAASNY VKFMQAQLGI LQSITSLHDQ VIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677072.10.0PREDICTED: transcription factor bHLH52-like
TrEMBLA0A0J8CEB10.0A0A0J8CEB1_BETVU; Uncharacterized protein
STRINGXP_010677072.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.19e-19bHLH family protein