PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_104330_mwyu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 457aa    MW: 50094.5 Da    PI: 8.3397
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_104330_mwyu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.83.8e-3244148199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  Bv5_104330_mwyu.t1  44 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSNNEKGLLLNFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGvG 134
                         89****************************77788999*************************************************6658 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Bv5_104330_mwyu.t1 135 EvGKDKLFIDWRRR 148
                         88999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-4134150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2941144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-2542131No hitNo description
SMARTSM010194.3E-2344149IPR003340B3 DNA binding domain
PROSITE profilePS5086314.76244149IPR003340B3 DNA binding domain
PfamPF023622.0E-2944148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDYPYKGWML SNHSSATTAT ATKMEVHVDD EEDDKIVIER EHMFDKVVTP SDVGKLNRLV  60
IPKQHAEKYF PLDSSNNEKG LLLNFEDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK  120
LDAGDVVSFQ RGVGEVGKDK LFIDWRRRPD ASGLHQHLQY HHHHSHNRTA LPAAAAAAAG  180
GCWTSNTGPT FVLRSHPHPH SHPHPHPYSQ PYPYPLLQGG GGGGGGVWDH QGNTTTHLSL  240
MNVLPSQSHT PPLRRGMGLG GGGGGGSYGY GYGNVVNPYP VTGSLIFLRS SSVPTTTSVG  300
GGGTTSLTQQ IVEDQGASSM MQVQRGEGGV EAMPMVYESV PVVQGKAAAK RLRLFGVNMD  360
CPISHQTHDF DILSSSLASS STPNYHHHHH HHQHHQHEQQ QHHTTGSISM GPPSSSSFST  420
PTSHQHSLRS FYNGTTHPEK GKSSSTSSPS MSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-67391493114B3 domain-containing transcription factor NGA1
5os9_B6e-67391493114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676939.10.0PREDICTED: uncharacterized protein LOC104892653
TrEMBLA0A0K9RMQ11e-136A0A0K9RMQ1_SPIOL; Uncharacterized protein
STRINGXP_010676939.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-65B3 family protein