PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_103110_knze.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 360aa MW: 41264.9 Da PI: 6.3446

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_103110_knze.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	77	130	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG++kAtPk +l+lm++kgL+++hvkSHLQ+YR+ Bv5_103110_knze.t1 77 PRLRWTPDLHLRFIHAVERLGGQDKATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-30	73	131	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.059	73	133	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-15	74	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-23	77	132	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	78	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MLESNNQIEC SKTNLCDEEA EDQDEEENDE NDEGTTQNTN SKNGGSSSNS TVEEMSDGMK 60 RSSSSTAVRP YIRSKTPRLR WTPDLHLRFI HAVERLGGQD KATPKLVLQL MNIKGLSIAH 120 VKSHLQMYRS KKAEDQSQAT CDQKHIFEVR DCNIFNLSQL PLLQGYCQAP SSNYRSIDPM 180 WTTTNPSWTR GLYTADMESR VNENVWQRFG IEQHPPRIIE QIHQQAWQKP GISPMAKDLS 240 LTMQHHHQYQ AKVDQKRFIS CNSNDSLHKQ ILLKRKRLEC DDHGNIDLNL SLKIPRTQSE 300 DHDHEGCNTI LNDEVDKSSL LSLSSSLKFE FKVKDGDYDH GDRNKQEYCT RGTSTLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MLESNNQIEC SKTNLCDEEA EDQDEEENDE NDEGTTQNTN SKNGGSSSNS TVEEMSDGMK  60
RSSSSTAVRP YIRSKTPRLR WTPDLHLRFI HAVERLGGQD KATPKLVLQL MNIKGLSIAH  120
VKSHLQMYRS KKAEDQSQAT CDQKHIFEVR DCNIFNLSQL PLLQGYCQAP SSNYRSIDPM  180
WTTTNPSWTR GLYTADMESR VNENVWQRFG IEQHPPRIIE QIHQQAWQKP GISPMAKDLS  240
LTMQHHHQYQ AKVDQKRFIS CNSNDSLHKQ ILLKRKRLEC DDHGNIDLNL SLKIPRTQSE  300
DHDHEGCNTI LNDEVDKSSL LSLSSSLKFE FKVKDGDYDH GDRNKQEYCT RGTSTLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676796.1	0.0	PREDICTED: uncharacterized protein LOC104892532 isoform X2
TrEMBL	A0A0K9RXN8	1e-121	A0A0K9RXN8_SPIOL; Uncharacterized protein
STRING	XP_010676795.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-50	G2-like family protein