PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_102770_jswm.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 293aa    MW: 35385.8 Da    PI: 8.4628
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_102770_jswm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.12.7e-2447129186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+ qe+++ + +r ++++++ ++k++k lWe +s kmr++gf+rs++qCk+kw+nl +ryk ++++e +     ++++p++++++
  Bv5_102770_jswm.t1  47 QWSIQETKEFLIVRADLDRNFMETKRNKLLWEVISTKMRDKGFNRSAEQCKCKWKNLVTRYKGCETMEPEV---MRQQFPFYNEMQ 129
                         7********************************************************************96...45679******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.12E-2146111No hitNo description
PfamPF138371.6E-1947131No hitNo description
PROSITE profilePS500906.95748104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MERHHIIHHD QQQQQQHQYR QPQQLQQQQQ QMIPNTVGVD TGDRFPQWSI QETKEFLIVR  60
ADLDRNFMET KRNKLLWEVI STKMRDKGFN RSAEQCKCKW KNLVTRYKGC ETMEPEVMRQ  120
QFPFYNEMQA IFTARMQRML WAEEESGPGP SKKMKATMSS DEEEDDQDTD GEKGVQKKKT  180
NNKKARTNIS SSSSISSSSI NAIKDMLEEF MKQQLQMEVQ WREAYEAREE ERRRAEAEWR  240
QRMEALENER VVMERRWRER EEQRKIREET RAEKRDALIT TLLNKLRRED SNM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676752.10.0PREDICTED: trihelix transcription factor GT-3b
SwissprotO804507e-74TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A0K9RBN41e-116A0A0K9RBN4_SPIOL; Uncharacterized protein
STRINGXP_010676752.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-57Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]