PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_102770_jswm.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | Trihelix | ||||||||
Protein Properties | Length: 293aa MW: 35385.8 Da PI: 8.4628 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77.1 | 2.7e-24 | 47 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r ++++++ ++k++k lWe +s kmr++gf+rs++qCk+kw+nl +ryk ++++e + ++++p++++++ Bv5_102770_jswm.t1 47 QWSIQETKEFLIVRADLDRNFMETKRNKLLWEVISTKMRDKGFNRSAEQCKCKWKNLVTRYKGCETMEPEV---MRQQFPFYNEMQ 129 7********************************************************************96...45679******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 4.12E-21 | 46 | 111 | No hit | No description |
Pfam | PF13837 | 1.6E-19 | 47 | 131 | No hit | No description |
PROSITE profile | PS50090 | 6.957 | 48 | 104 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MERHHIIHHD QQQQQQHQYR QPQQLQQQQQ QMIPNTVGVD TGDRFPQWSI QETKEFLIVR 60 ADLDRNFMET KRNKLLWEVI STKMRDKGFN RSAEQCKCKW KNLVTRYKGC ETMEPEVMRQ 120 QFPFYNEMQA IFTARMQRML WAEEESGPGP SKKMKATMSS DEEEDDQDTD GEKGVQKKKT 180 NNKKARTNIS SSSSISSSSI NAIKDMLEEF MKQQLQMEVQ WREAYEAREE ERRRAEAEWR 240 QRMEALENER VVMERRWRER EEQRKIREET RAEKRDALIT TLLNKLRRED SNM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010676752.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 7e-74 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A0K9RBN4 | 1e-116 | A0A0K9RBN4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676752.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 5e-57 | Trihelix family protein |
Publications ? help Back to Top | |||
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