PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_101020_uphg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 679aa    MW: 76625.1 Da    PI: 5.9423
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_101020_uphg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.19.1e-1292976632374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         ++ L+ c+ea++s++  ++++++a+l e+asp+g +++ Rl+ayfteALa r++r +++++++  p+e ++ + ++ +aa++l++++sPi+
  Bv5_101020_uphg.t1 297 ISFLMGCVEAITSRNIPAVNHFIAKLGEQASPRGrSTISRLTAYFTEALALRVTRLWPRMFHISVPRELDRFDDESGAAAFRLLNQISPIP 387
                         678*******************************8899********************************9999999************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf h+taN+++l+a+eg+++vHiiDfdi+qGlQWp ++q+LasR ++p ++RiTg+g+    sk+el etgerLa+fAe++++pfef++ v
  Bv5_101020_uphg.t1 388 KFIHFTANEMLLRAFEGKDKVHIIDFDIKQGLQWPGFFQSLASRHNPPSHVRITGIGE----SKQELIETGERLASFAEAFNLPFEFHP-V 473
                         **********************************************************....***************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++rled++l++L+vk+gE++aVn++lqlh++l ++++ +   ++++ l++s++P  +v++eqeadhn+++   r++++l+yysa+fds+++
  Bv5_101020_uphg.t1 474 VDRLEDVRLWMLHVKEGESVAVNCILQLHKTLYDTTNASF--RDFMGLIRSTNPIAFVMAEQEADHNEPNMEMRVCSSLRYYSAIFDSIDS 562
                         ********************************88877776..99*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWk 363
                         +lp +  +r+k+E++ +grei+n+vaceg++r+erhe++++W++r+e++GF  v+ +e+++ q ++ll++++++ y+ve++ +++++l W+
  Bv5_101020_uphg.t1 563 SLPYDIPARVKIEEM-FGREIRNIVACEGSDRIERHEKFGNWKRRMEQVGFWCVKRNEREVFQSQMLLKMYSNESYNVEQQgDDAITLRWM 652
                         ***************.********************************************************9******88355566**** PP

                GRAS 364 drpLvsvSaWr 374
                         d+pL++vS W+
  Bv5_101020_uphg.t1 653 DQPLYTVSLWT 663
                         **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.616270642IPR005202Transcription factor GRAS
PfamPF035143.1E-126297663IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MLAGCSSTLL SPRHRLRSEA SAQFQACHYP LPSMSTQRLD LPCNFPRKEV SRPQSIRSPV  60
GLSVEKPIET KTLKQSIKVP PSPEGRREVK GEFWREKGKK SLKRRFREQG SFDDGDDDEG  120
NDDSCVGRAK RKKGSFEFGE SECFSPEGKD HLSLSHLGCG ENFWIQQPGF GVVNFPQVPF  180
SITCSGEEER VCFAPTDVVS PPPLPPLSHT PWVESDVTEI PEYGGDKEGE PSHGPVTTTS  240
GSSSSSESHS FGLRLSENVS EREFGNGAMN PNPGDGSRAV RNHNNDDQTE QQGFELISFL  300
MGCVEAITSR NIPAVNHFIA KLGEQASPRG RSTISRLTAY FTEALALRVT RLWPRMFHIS  360
VPRELDRFDD ESGAAAFRLL NQISPIPKFI HFTANEMLLR AFEGKDKVHI IDFDIKQGLQ  420
WPGFFQSLAS RHNPPSHVRI TGIGESKQEL IETGERLASF AEAFNLPFEF HPVVDRLEDV  480
RLWMLHVKEG ESVAVNCILQ LHKTLYDTTN ASFRDFMGLI RSTNPIAFVM AEQEADHNEP  540
NMEMRVCSSL RYYSAIFDSI DSSLPYDIPA RVKIEEMFGR EIRNIVACEG SDRIERHEKF  600
GNWKRRMEQV GFWCVKRNER EVFQSQMLLK MYSNESYNVE QQGDDAITLR WMDQPLYTVS  660
LWTSVDASAG SSSSFSQPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6630366326379Protein SCARECROW
5b3h_A3e-6630366325378Protein SCARECROW
5b3h_D3e-6630366325378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4503759e-33AM450375.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X271656.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104982.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0K9QJN00.0A0A0K9QJN0_SPIOL; Uncharacterized protein
STRINGXP_010676544.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein