PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_100880_qdgj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 337aa    MW: 36571.6 Da    PI: 4.8405
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_100880_qdgj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36341252102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++elisw+++g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k 
  Bv5_100880_qdgj.t1  34 FLTKTYQLVDDPSVDELISWNDDGSSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRGEKL 115
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Bv5_100880_qdgj.t1 116 LLRDIQRRKI 125
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-5930123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.9E-3831123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.78E-3531123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.4E-213457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-217284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-218597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPPMPADQNG DSAGAGSGSG NGVDSQQRTL PTPFLTKTYQ LVDDPSVDEL ISWNDDGSSF  60
IVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFANDCFK RGEKLLLRDI  120
QRRKISPAPA INSPMATVVT PIAVQATVTV AAPPPVAVRT ASPSNSGDEQ VHSSNSSPSP  180
IVVTPQRTTT NCGSSTEILE ENEKLRRENF NLSQELNHLR GLCNNILALM SNYASGQHET  240
GGLTEGRQLE LLLAKPVTVE PEHCGGSSGG ATASGGDKVE EEIEEGEGCP CQPCPRLFGV  300
SIGAKRVRRE GDEENRRSGE PVPPQQEEQG SGDDLTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-273412310110Heat shock factor protein 1
5hdn_A1e-273412310110Heat shock factor protein 1
5hdn_B1e-273412310110Heat shock factor protein 1
5hdn_C1e-273412310110Heat shock factor protein 1
5hdn_D1e-273412310110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676525.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D32e-86HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0K9QAJ41e-170A0A0K9QAJ4_SPIOL; Uncharacterized protein
STRINGXP_010676525.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-81HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]