PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_100850_mhxh.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 525aa MW: 57630.6 Da PI: 8.5171 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 55 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l Bv5_100850_mhxh.t1 55 KGGWTEEEDNLLTAAVRKFNGKNWKKIAEHFP-ERTDVQCLHRWQKVL 101 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.8 | 5.9e-19 | 107 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ + + v+++G ++W+ Ia++++ gR +kqc++rw+++l Bv5_100850_mhxh.t1 107 KGPWTKEEDDCITEMVQKHGCRSWSVIAKCLP-GRIGKQCRERWHNHL 153 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 56.2 | 7.7e-18 | 159 | 202 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE+ ll+ +++ +G++ W+ Iar ++ gRt++ +k++w++ Bv5_100850_mhxh.t1 159 KDAWTEEEESLLIYYHQIYGNK-WAEIARFLP-GRTDNAIKNHWNS 202 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 32 | No hit | No description |
PROSITE profile | PS51294 | 17.532 | 50 | 101 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.83E-20 | 53 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-17 | 54 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 55 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-23 | 57 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.29E-15 | 58 | 101 | No hit | No description |
PROSITE profile | PS51294 | 27.466 | 102 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.3E-32 | 104 | 200 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-16 | 106 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-18 | 107 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.58E-15 | 109 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 114 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.772 | 158 | 208 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-17 | 158 | 206 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 159 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.15E-14 | 161 | 204 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 161 | 208 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MIEVKKDDDG SNLGSPDGVT IASSSSLSSS SCDNVTPRST PLHGRISGAT RRSSKGGWTE 60 EEDNLLTAAV RKFNGKNWKK IAEHFPERTD VQCLHRWQKV LNPELVKGPW TKEEDDCITE 120 MVQKHGCRSW SVIAKCLPGR IGKQCRERWH NHLDPAIKKD AWTEEEESLL IYYHQIYGNK 180 WAEIARFLPG RTDNAIKNHW NSSLKKRLDA KLLPGFTQSI NNKPKTNCSE RNLDFSRVKA 240 AALFYEDSCT TSTYGTESCS TTLSLGIAPG KAYGSEAKLN RPSRVLLDEN GSALGEVNLQ 300 LSSTVTVDTS LNFSTLTNYK ATPLTMLSLD SPKRPRSDSI TVDQVFVNLD KSFLSLAMSG 360 FSKDDSHGKK KNKVKGTSFS EDISYGNLCY EPPGLRISET GQGYEVGYKE SHDAQTNSPL 420 YFSTPTSCVS TPASGSSPES ILRNSAMSFS MPSIIRRRNS GKSSSVRKEV GSGGVRRAET 480 TATHKPVERC LEPSFDMEAD LGGLKCGNSI ATSGDGVCLK TMSIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-68 | 55 | 208 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-68 | 55 | 208 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019104777.1 | 0.0 | PREDICTED: uncharacterized protein LOC104892321 | ||||
STRING | XP_010676520.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 8e-88 | myb domain protein 3r-4 |