PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_100850_mhxh.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 525aa    MW: 57630.6 Da    PI: 8.5171
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_100850_mhxh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-1855101148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEd ll  av+++ g++Wk+Ia++++  Rt+ qc +rwqk+l
  Bv5_100850_mhxh.t1  55 KGGWTEEEDNLLTAAVRKFNGKNWKKIAEHFP-ERTDVQCLHRWQKVL 101
                         688*****************************.************986 PP

2Myb_DNA-binding59.85.9e-19107153148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+ + + v+++G ++W+ Ia++++ gR +kqc++rw+++l
  Bv5_100850_mhxh.t1 107 KGPWTKEEDDCITEMVQKHGCRSWSVIAKCLP-GRIGKQCRERWHNHL 153
                         79******************************.*************97 PP

3Myb_DNA-binding56.27.7e-18159202146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT+eE+ ll+ +++ +G++ W+ Iar ++ gRt++ +k++w++
  Bv5_100850_mhxh.t1 159 KDAWTEEEESLLIYYHQIYGNK-WAEIARFLP-GRTDNAIKNHWNS 202
                         679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576132No hitNo description
PROSITE profilePS5129417.53250101IPR017930Myb domain
SuperFamilySSF466896.83E-2053115IPR009057Homeodomain-like
SMARTSM007178.6E-1754103IPR001005SANT/Myb domain
PfamPF002492.5E-1655101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2357113IPR009057Homeodomain-like
CDDcd001673.29E-1558101No hitNo description
PROSITE profilePS5129427.466102157IPR017930Myb domain
SuperFamilySSF466893.3E-32104200IPR009057Homeodomain-like
SMARTSM007176.2E-16106155IPR001005SANT/Myb domain
PfamPF002496.9E-18107153IPR001005SANT/Myb domain
CDDcd001672.58E-15109153No hitNo description
Gene3DG3DSA:1.10.10.601.7E-27114160IPR009057Homeodomain-like
PROSITE profilePS5129421.772158208IPR017930Myb domain
SMARTSM007171.5E-17158206IPR001005SANT/Myb domain
PfamPF002492.8E-15159202IPR001005SANT/Myb domain
CDDcd001678.15E-14161204No hitNo description
Gene3DG3DSA:1.10.10.601.2E-23161208IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MIEVKKDDDG SNLGSPDGVT IASSSSLSSS SCDNVTPRST PLHGRISGAT RRSSKGGWTE  60
EEDNLLTAAV RKFNGKNWKK IAEHFPERTD VQCLHRWQKV LNPELVKGPW TKEEDDCITE  120
MVQKHGCRSW SVIAKCLPGR IGKQCRERWH NHLDPAIKKD AWTEEEESLL IYYHQIYGNK  180
WAEIARFLPG RTDNAIKNHW NSSLKKRLDA KLLPGFTQSI NNKPKTNCSE RNLDFSRVKA  240
AALFYEDSCT TSTYGTESCS TTLSLGIAPG KAYGSEAKLN RPSRVLLDEN GSALGEVNLQ  300
LSSTVTVDTS LNFSTLTNYK ATPLTMLSLD SPKRPRSDSI TVDQVFVNLD KSFLSLAMSG  360
FSKDDSHGKK KNKVKGTSFS EDISYGNLCY EPPGLRISET GQGYEVGYKE SHDAQTNSPL  420
YFSTPTSCVS TPASGSSPES ILRNSAMSFS MPSIIRRRNS GKSSSVRKEV GSGGVRRAET  480
TATHKPVERC LEPSFDMEAD LGGLKCGNSI ATSGDGVCLK TMSIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-68552086159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-68552086159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104777.10.0PREDICTED: uncharacterized protein LOC104892321
STRINGXP_010676520.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.28e-88myb domain protein 3r-4