PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_100380_txhd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family RAV
Protein Properties Length: 353aa    MW: 40978 Da    PI: 8.8954
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_100380_txhd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-104996154
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                        s++kGV +   +g W A+I+       +  r++lg+f t+  Aa+a++ a+ kl+
  Bv5_100380_txhd.t1 49 SRFKGVVYQQ-NGHWGAQIYA------NhHRIWLGTFKTEAAAAAAYDSAAIKLR 96
                        789***9988.8******999......44**********99**********9997 PP
2B3841.3e-26175277185
                         EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                         f k+ltpsdv+k++rlv+pk++a ++                  g+++ ++++l+++d++ rsW+++++y+k+s+++v+t+GW++Fv+ ++
  Bv5_100380_txhd.t1 175 FRKELTPSDVGKLNRLVIPKRYALKYfpindrvsrnfslsefqeGEDQGGDMELIFYDKKMRSWKFRYCYWKSSQSFVFTRGWNKFVRVKE 265
                         89***************************************99988889****************************************** PP

                         --TT-EEEEEE- CS
                  B3  74 LkegDfvvFkld 85 
                         L+++D+++F++ 
  Bv5_100380_txhd.t1 266 LEAKDIITFYMC 277
                         *********953 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-1249108IPR016177DNA-binding domain
PfamPF008476.0E-64996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-1550108IPR001471AP2/ERF domain
PROSITE profilePS5103216.4150108IPR001471AP2/ERF domain
SMARTSM003801.1E-1450114IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.5E-31171304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-25174282IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-24174276No hitNo description
PfamPF023624.0E-24175277IPR003340B3 DNA binding domain
SMARTSM010191.5E-19175285IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448175293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMEEEIVLST MTKTDASESY SSNSTTQRPN TDNRPNTTNR PKKQNGSCSR FKGVVYQQNG  60
HWGAQIYANH HRIWLGTFKT EAAAAAAYDS AAIKLRHGNS GEAHRNFPWT GITMYEPNFQ  120
AHYATDQVLN MIKDGSYQTK FGEYLSSVCQ VRNAQTSNHN NNQNKQEGYY CQELFRKELT  180
PSDVGKLNRL VIPKRYALKY FPINDRVSRN FSLSEFQEGE DQGGDMELIF YDKKMRSWKF  240
RYCYWKSSQS FVFTRGWNKF VRVKELEAKD IITFYMCELK ENNVEDVKKF WMIDVVKCST  300
NSSHKLDKEV VHGTEIQEEK VYMVEGEATN TKKDAGFRLF GVQIKPIHCD QKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-24172277596B3 domain-containing transcription factor NGA1
5os9_B3e-24172277596B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676971.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-99RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0K9RYJ91e-166A0A0K9RYJ9_SPIOL; Uncharacterized protein
STRINGXP_010676971.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.15e-93RAV family protein