PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_097390_hpci.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 291aa    MW: 33236.2 Da    PI: 9.6986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_097390_hpci.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-1068113344
                         SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrw 44 
                         +WT  Ed+l+ +a   +  +     +W++Ia +++ gR++ ++++++
  Bv4_097390_hpci.t1  68 KWTRAEDKLFEEALVIFADEeaaeeRWRKIAGHVP-GRSPVEVRDHY 113
                         8*****************99***************.**********9 PP
2Myb_DNA-binding45.51.8e-14175219347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Bv4_097390_hpci.t1 175 PWTEEEHRLFLIGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKY 219
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.86361117IPR017877Myb-like domain
SuperFamilySSF466895.11E-1063117IPR009057Homeodomain-like
SMARTSM007172.9E-765119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-866117IPR009057Homeodomain-like
CDDcd001672.57E-868117No hitNo description
PfamPF002491.5E-868113IPR001005SANT/Myb domain
PROSITE profilePS5129419.909168224IPR017930Myb domain
SuperFamilySSF466897.59E-17170224IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-17171223IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.4E-12172218IPR009057Homeodomain-like
SMARTSM007171.0E-11172222IPR001005SANT/Myb domain
PfamPF002492.0E-12175219IPR001005SANT/Myb domain
CDDcd001675.34E-10175219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMKPTMAPRS QAKNPLHAKK SRYFTKSFSL IKPSFFFYQL IFNSHNSNSK IPTPKFQLPS  60
SSSFDSRKWT RAEDKLFEEA LVIFADEEAA EERWRKIAGH VPGRSPVEVR DHYEALIYDV  120
DEIDSGRVQL PCYSDEFAAS WWSTESQPTR SNQISFGCDG NKPKHNEVER KKGTPWTEEE  180
HRLFLIGLEK YGKGDWRSIS RNVVVTRTPT QVASHAQKYY LRQNSGKKER KRSSIHDITT  240
VDEKLAAQSV PGGNTMEHHT AFQQLGTSPP FSTNTTQGGT AFGYQNFGFP M
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695074.11e-172PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN65e-57SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0J8E4750.0A0A0J8E475_BETVU; Uncharacterized protein
STRINGXP_010695074.11e-171(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-72MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]