PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_096530_ozyh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 283aa    MW: 32636.5 Da    PI: 6.8821
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_096530_ozyh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-11103147347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          W+++E+ l++ +vk + +g+W+ I++ +  +R++ q+ s+ qky
  Bv4_096530_ozyh.t1 103 QWSKDEHRLFLIGVKIYKKGQWTNISKNVVVTRSPTQVASHAQKY 147
                         6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0471066IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-51268IPR009057Homeodomain-like
PROSITE profilePS500905.5751364IPR017877Myb-like domain
CDDcd001670.001771363No hitNo description
PROSITE profilePS5129420.12296152IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-896149IPR009057Homeodomain-like
SuperFamilySSF466897.03E-1397150IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1099150IPR006447Myb domain, plants
SMARTSM007179.5E-8100150IPR001005SANT/Myb domain
PfamPF002491.7E-9103147IPR001005SANT/Myb domain
CDDcd001671.13E-6104147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MITEPPLSSY CEPWSFTEDK LFEECIAEGY FDIEDESTRW LQITTKLGGK RTPAEIQNHY  60
YELAYDVESI ENDRVPLPNY SDLYNSDDDS EDDDSKPRKR GSQWSKDEHR LFLIGVKIYK  120
KGQWTNISKN VVVTRSPTQV ASHAQKYYSR NDPANIQKRK RSSIHDITVN DDAALQKLHK  180
KGLLPTHILD KLRSAEIKIK QEHSNEQVNN NNNSISPNYQ LQTPQVVLNG QVSNTSQSQY  240
QQRPPLPPPL LMPRQPSPPP LLTLSRSPPP PPQLWPQQSC YWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694960.10.0PREDICTED: transcription factor DIVARICATA
TrEMBLA0A0J8BDL00.0A0A0J8BDL0_BETVU; Uncharacterized protein
STRINGXP_010694960.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-36MYB family protein