PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_095720_cndg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 999aa    MW: 110767 Da    PI: 5.7114
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_095720_cndg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-41145222178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C adl++ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+
  Bv4_095720_cndg.t1 145 VCQVEDCGADLTKAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTQP 222
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-33139207IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.206143220IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-38144225IPR004333Transcription factor, SBP-box
PfamPF031101.1E-29146219IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.3E-8750890IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.77E-9776890IPR020683Ankyrin repeat-containing domain
SMARTSM0024868778808IPR002110Ankyrin repeat
CDDcd002045.47E-10783890No hitNo description
SMARTSM002480.94831861IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MEQARRFHAL GPSEMRGMGK RGSEWDLNDW KWDGDLFIAT RSGGALPSNY QGQQFIPVSG  60
NSSNSSTSCS DDVHSSIDDG RRESERKRRV IVVEEDSLEE AGSLTLKLGG NCFPVSESER  120
EVGTWEGTSG KKTAKLVGGS SNRAVCQVED CGADLTKAKD YHRRHKVCEM HSKASKALVG  180
NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNKRRRKT QPDTAVHGNS INDEQTNNVL  240
LMSLPRILSD MHANNKSDQS TDQDLVAQLL RSLANPSGLH VAKGLHGLLH ESHKLLNGGM  300
ANGNGHSEKM SDCLSNDHLN SPQVIDQHDA LPDSAIPRKE LYEANSRSSE MQVVSSQDPG  360
NLFPIKDSPP AHSETTAGRM KLNNFDLNDA YVDSDDGIED LERSPVDGHC TTGSVDFPSW  420
AGHVSHQSSP PQTNSDSASA QSPSSSSGEP QCRTDRIVFK LFGKEPGDFP MVLRGQILDW  480
LAHSPTDIES YIRPGCIILT IYLRLAESSW EELCSDLSSC LTRLFDISED TFWSSGWVYV  540
RVQNQIACFH NGQVILDTTL SLQNSNSGQI LSIMPIAVSM DERAEFEVRG FNLSGSTTRL  600
LCALEGKYLD QEATQESKED GESVEEDDET EHATMSCVIP KITGRGYIEV EDHGLSSSFF  660
PFIVAEKNVC SEIRTLESVL ELKEADEDAY EVKGTFESRR LALDFINEMG WLLHRSHLKS  720
RLADLDPNTV IFSFRRFTWL MDFSIDHDWC AVVRKLLDVL VDGTVGSGEH PSLKVAMSQM  780
GLLHKAVRKN SRSMVELLLK YVPDNLAEDF ISTADGGQVR FMFRPDAQGP AGLTPLHVAA  840
GRDGSEDVLD ALLDDPGKIG IDAWKNARDS TGATPEDYAR MRGQYAYIHM VQRKIQRSSA  900
ARHVVLDIPV ESSVSLRHDG AVSFEVGRNV TQSCKLCDQK MSVYYRSSAR TSLVYRPAML  960
SMVAIAAVCM CVALLFKSMP NVVCLFQPFR WESLNYGPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-32139219484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694791.10.0PREDICTED: squamosa promoter-binding-like protein 1
RefseqXP_010694792.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A0J8BDT70.0A0A0J8BDT7_BETVU; Uncharacterized protein
STRINGXP_010694791.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]