PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_092590_cwni.t3
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 493aa    MW: 53582.6 Da    PI: 6.5887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_092590_cwni.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.3e-063844221154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Bv4_092590_cwni.t3 384 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 422
                         5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.449373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-10383428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-7383426No hitNo description
SMARTSM003530.0024384428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8387426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAEEYCGGPN WWDSPTTNRS RFDGGSGGGG GAGGGSSSTS STTTLANSGG GTAYGWLTDG  60
PTAVDTKMDA SSLQLVGLGL SSQAMAEWNQ QQTTTILRNP EKADNSFRSM LQEGIGLNAN  120
FQQDSSGGGG GGGGGGGVLF GGNNSSHLHQ WRPEKLFPSN EDSSSEFKQL GRGFSLDNQP  180
QFSPNGSSIE STVTCQGLNA PSSFQLDSSS SSSVFGSPSS ILQGLMGTEH QNHQQQEQQQ  240
QQQQQQQQQQ QQQHINTNYQ QNYYGMGVAN DHHHQQSQLP SPWAKVPQFL RATSPKQQQQ  300
QQQLQFMNNA PYWSTSTPLN DVRPTFFSSL QAGQLPNMPT FEEKPKTTME VRDTSSMLKK  360
SGSENNIKRA RNDGASSTLP PFKVRKEKMG DRITALQQLV SPFGKTDTAS VLSEAIEYIK  420
FLHEQVLSNP YLKSGGSYQQ HQQSNEKAKI DPDGPKQDLR SRGLCLVPVS STFPVTHETT  480
VDFWTPTFGG TFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12535SGGGGGAGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694304.10.0PREDICTED: transcription factor bHLH123 isoform X3
TrEMBLA0A0K9RQ940.0A0A0K9RQ94_SPIOL; Uncharacterized protein
STRINGXP_010694302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-69bHLH family protein