PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_092260_ddzu.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 499aa MW: 54368.5 Da PI: 9.5401

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_092260_ddzu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.2e-05	266	288	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+++F+ ++ L+ H + H Bv4_092260_ddzu.t1 266 TCHKCKEHFNKWDALEAHHLSnH 288 8*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	267	288	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.09E-19	290	498	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MEGGGKNGKG KKQQGKENNK PNVWFSLKKS LHCKSEASDV HEPKSKSSLS KSKNHHNHNH 60 NDNDNSMMNS ILTRRVGRSG CSRSIANLKD VIHGNSKRHI EKPPSCSPRS IGSSEFLNPI 120 THEVILSNSR CELKITGYAP FGNCTDGLGS IGGGGGGAAT ERATAATATA TAANGGREES 180 TFVGTLRPGT PGPGGHPTMH YFNNNNNPLF GKNSGMGMGM PRKSFSVERE TEIFGNGGSS 240 SGINNSRKRF SLEIDSNGSS HTQHLTCHKC KEHFNKWDAL EAHHLSNHAV TELVEGDSSR 300 KIVEIICRTS WLKSENHCGR IERVLKVHNT QKTIARFEEY REMVKIKASK LAKKHPRCLA 360 DGNELLRFYG TTVACSLGID GSSSLCISEK CCVCRIIRHG FYTKKEIKSG VGVFTTSTSG 420 RAFEGIEFFD DDASIKKALI VCRVIAGRVH RPLENVQELA GQTGFDSLAG KVGLYSSIEE 480 LYLLNPRALL PCFVVICKP

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MEGGGKNGKG KKQQGKENNK PNVWFSLKKS LHCKSEASDV HEPKSKSSLS KSKNHHNHNH  60
NDNDNSMMNS ILTRRVGRSG CSRSIANLKD VIHGNSKRHI EKPPSCSPRS IGSSEFLNPI  120
THEVILSNSR CELKITGYAP FGNCTDGLGS IGGGGGGAAT ERATAATATA TAANGGREES  180
TFVGTLRPGT PGPGGHPTMH YFNNNNNPLF GKNSGMGMGM PRKSFSVERE TEIFGNGGSS  240
SGINNSRKRF SLEIDSNGSS HTQHLTCHKC KEHFNKWDAL EAHHLSNHAV TELVEGDSSR  300
KIVEIICRTS WLKSENHCGR IERVLKVHNT QKTIARFEEY REMVKIKASK LAKKHPRCLA  360
DGNELLRFYG TTVACSLGID GSSSLCISEK CCVCRIIRHG FYTKKEIKSG VGVFTTSTSG  420
RAFEGIEFFD DDASIKKALI VCRVIAGRVH RPLENVQELA GQTGFDSLAG KVGLYSSIEE  480
LYLLNPRALL PCFVVICKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694273.1	0.0	PREDICTED: uncharacterized protein LOC104907097
TrEMBL	A0A0K9R2T8	0.0	A0A0K9R2T8_SPIOL; Uncharacterized protein
STRING	XP_010694273.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-125	C2H2 family protein