PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_089940_tmkj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 466aa    MW: 52068.1 Da    PI: 5.1206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_089940_tmkj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.95.1e-132954661374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+e+L++cA+avs++dl  a++l+++l++++s +g+p+qRl ay++e+L ar ++s+ ++yk+l+++e +   s e l+ ++l++ev+P++
  Bv4_089940_tmkj.t1  95 LKEVLIACAKAVSDDDLLTAEWLISELQHMVSVSGEPIQRLGAYMLEGLIARFSSSGISIYKTLNCNEPT---SGELLSHMQLLYEVCPYF 182
                         5789*****************************************************************9...999*************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI +a+++e+r+HiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg+++++s+  +   l+ +gerL+k+A+++++pfef++
  Bv4_089940_tmkj.t1 183 KFGYMSANGAIADALKNEDRIHIIDFQIAQGSQWVSLIQALAARPGGPPQVRITGIDDSTSEyaRGGGLNIVGERLSKLAKACNLPFEFQA 273
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          + +  ++++le++ ++p+EalaVn+ ++lh+++desv  e++rd++L+lvks sPkvv++ve e+++n+++F+ rfle+l+yysa+f+s+
  Bv4_089940_tmkj.t1 274 AALRCGTEVKLENFVLRPEEALAVNFPFRLHHIPDESVGPENHRDTLLRLVKSWSPKVVTLVEYELNTNTAPFFPRFLETLDYYSAIFESI 364
                         8888999************************************************************************************ PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lp++++eri+vE+++l++e+vn++acegaer+erhe  +kW++r+ +aGF+p+pls  ++ ++++ll+k++ + y +ee++g+l+lgW
  Bv4_089940_tmkj.t1 365 NVTLPTDHKERINVEQHCLAKEVVNIIACEGAERIERHELHGKWKSRFLMAGFNPYPLSPLVNGTIRTLLQKYS-RSYGLEERNGALYLGW 454
                         **************************************************************************.66************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+++aW+
  Bv4_089940_tmkj.t1 455 MNRVLVTACAWQ 466
                         ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.84769447IPR005202Transcription factor GRAS
PfamPF035141.8E-12995466IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MQNPRNTQGF SCTFDSSLLI GADNFCGSPS TESISGNGST VSLIDPEYSS SDSHDIDNLR  60
NQLRELENVM MGTTSGSFET ENWQRLVEMI KRGELKEVLI ACAKAVSDDD LLTAEWLISE  120
LQHMVSVSGE PIQRLGAYML EGLIARFSSS GISIYKTLNC NEPTSGELLS HMQLLYEVCP  180
YFKFGYMSAN GAIADALKNE DRIHIIDFQI AQGSQWVSLI QALAARPGGP PQVRITGIDD  240
STSEYARGGG LNIVGERLSK LAKACNLPFE FQAAALRCGT EVKLENFVLR PEEALAVNFP  300
FRLHHIPDES VGPENHRDTL LRLVKSWSPK VVTLVEYELN TNTAPFFPRF LETLDYYSAI  360
FESINVTLPT DHKERINVEQ HCLAKEVVNI IACEGAERIE RHELHGKWKS RFLMAGFNPY  420
PLSPLVNGTI RTLLQKYSRS YGLEERNGAL YLGWMNRVLV TACAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6110246526378Protein SCARECROW
5b3h_A1e-6110246525377Protein SCARECROW
5b3h_D1e-6110246525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675879.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_010675880.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0K9RZE70.0A0A0K9RZE7_SPIOL; Uncharacterized protein
STRINGXP_010675879.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]