PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_088950_cddu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 242aa    MW: 26689.7 Da    PI: 7.1006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_088950_cddu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-204089255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a+++a+++l+g
  Bv4_088950_cddu.t1 40 KFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDKAARQLRG 89
                        79*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7614097IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-224098IPR016177DNA-binding domain
SMARTSM003804.2E-3740103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-314097IPR001471AP2/ERF domain
CDDcd000185.22E-324096No hitNo description
PfamPF008471.3E-124089IPR001471AP2/ERF domain
PRINTSPR003673.1E-104152IPR001471AP2/ERF domain
PRINTSPR003673.1E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRRGGRSSTV KTTTNQAQNG STPPLDPSST NMIINTTNIK FRGVRKRPWG RFAAEIRDPW  60
KKTRVWLGTF DSAEDAARAY DKAARQLRGP KAKTNFSLSP QNDNVLLTSP PFYHQNDAVL  120
VDHDEIIVAE MIQRPASSGM SSTVESSHAI KINHHHNHHR KEHVTSHVPM DCRSDCDSSS  180
SVIDDVDGCD DDNIGCSSSV LAVGLTRNHQ QPPLSFDLNL PPPPENGGFF GFDDFPTTAL  240
CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-224198361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675777.10.0PREDICTED: ethylene-responsive transcription factor 3
TrEMBLA0A0K9R8149e-69A0A0K9R814_SPIOL; Uncharacterized protein
STRINGXP_010675777.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-25ethylene responsive element binding factor 3