PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_087490_ejxx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 376aa    MW: 42091.8 Da    PI: 7.6338
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_087490_ejxx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35251162102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+
  Bv4_087490_ejxx.t1  25 FLTKTYHLVDDPSTDHVVSWGEDDSTFVVWRPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKH 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  Bv4_087490_ejxx.t1 107 LLCDIHRRKT 116
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.21E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MALLLDHCDG IILSLDTTKS VPAPFLTKTY HLVDDPSTDH VVSWGEDDST FVVWRPPEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCD IHRRKTGQHQ  120
QTNTHCSSNT THLNFSHPGA NAYLAACFPG GGNRVSLSPP NSDSADDYIE CDNNNNNNNN  180
NNIHHGNNLD SSSPLSSSPA SSKCSYADAL TTLSEDNERL RRSNTMLMSE LTHMRKLYND  240
IIYFVQNHVK PVTVTTTTPT NNSYPSPPLV TAVNSMPKKP ALNLSQFIKN SNFSTSDEFT  300
TATATNKGNF SSLEDNESST TTTTCCKTRL FGVPIQSKKR LHPDQTVEIN YKARSMFGNH  360
DRLGLNLMPP SSSSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-23211167112Heat shock factor protein 1
5hdn_A2e-23211167112Heat shock factor protein 1
5hdn_B2e-23211167112Heat shock factor protein 1
5hdn_C2e-23211167112Heat shock factor protein 1
5hdn_D2e-23211167112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675615.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-95HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0K9QXH71e-145A0A0K9QXH7_SPIOL; Uncharacterized protein
STRINGXP_010675615.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-89heat shock transcription factor B4