PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_087440_twas.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 41055.8 Da PI: 9.294 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.1 | 1.5e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Bv4_087440_twas.t1 14 LPPGFRFYPTDEELLVQYLCRKVAGHQFSL-QIIAEIDLYKFDPWVLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKI 103 79***************************9.89***************8777899***********************************9 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Bv4_087440_twas.t1 104 ITT-QGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-66 | 10 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.539 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MGVQDKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHQ FSLQIIAEID LYKFDPWVLP 60 SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTQGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLT EPTRKSGSSK LDDWVLCRIY KKNSSAAKPT ISKEHSTGGS 180 SSSSSSHLDD VLESLPEIDD RSFALPRMNS LKNNVGHQQQ QQNQHQQQNQ QQHQNDKFNL 240 QHFGSGSFDW AVLAGLTSGP EFAFNGSTQP QQGQVNNNNN AMDMFIPSLP PLSQVESPVD 300 TKVRITSGLV DDEVQSGITS HRVNPSYYNH NTNMFTQSYN NSNSVDPFVM GHPNQFSFGF 360 GYRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-111 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-111 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-111 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-111 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-111 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-111 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ933532 | 0.0 | KJ933532.1 Suaeda liaotungensis putative NAC transcription factor (NAC10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010675611.1 | 0.0 | PREDICTED: NAC domain-containing protein 72 | ||||
Swissprot | A0A3Q7HH64 | 1e-143 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A088FQ49 | 0.0 | A0A088FQ49_9CARY; Putative NAC transcription factor | ||||
STRING | XP_010675611.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-127 | NAC family protein |
Publications ? help Back to Top | |||
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