PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_083670_hjqh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 719aa    MW: 81299.7 Da    PI: 5.5026
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_083670_hjqh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-13130213286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 
                         W+++e laL ++r++m+++   +      We vs+k++e gf+rs+++Ckek+e+  + +  +  +++++   ++++s ++++f +le
  Bv4_083670_hjqh.t1 130 WSNDEMLALFRIRSSMDNSWFPD----FIWENVSRKLEEVGFKRSAEKCKEKFEEETRSFNSCIINNSNNnnnKNNASINYRLFGELE 213
                         ******************98777....9*********************************995444443112566667788887776 PP
2trihelix96.62.2e-30559650186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         rW+++evlaLi++r ++ ++ + +        +k+plWe++s+km+e g++r++k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+q
  Bv4_083670_hjqh.t1 559 RWPRDEVLALINIRCSLFNNNSGDVhqdreafSKGPLWERISQKMMELGYKRNAKRCKEKWENINKYFRKTKDMNKKR-SIDSRTCPYFHQ 648
                         8*************9766655532122334559********************************************8.78889******* PP

            trihelix  85 le 86 
                         l+
  Bv4_083670_hjqh.t1 649 LN 650
                         97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.2126184IPR001005SANT/Myb domain
PfamPF138373.8E-9129197No hitNo description
PROSITE profilePS500906.202129182IPR017877Myb-like domain
PROSITE profilePS500906.272552623IPR017877Myb-like domain
SMARTSM007172.8556625IPR001005SANT/Myb domain
PfamPF138373.1E-19558651No hitNo description
CDDcd122037.10E-25558630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MFDGMTDQFY QFLAAGAGAT TSTRTRTTPT TSSTNSVIAA SSLPFSLHHS NFATYSSPPQ  60
PTFDASFHLL HHHSQFLSRN EVKEEITTTT TTTTTTLNNH PPTSIILPLT SLHHDNNLTR  120
TSLMLPEIPW SNDEMLALFR IRSSMDNSWF PDFIWENVSR KLEEVGFKRS AEKCKEKFEE  180
ETRSFNSCII NNSNNNNNKN NASINYRLFG ELEELCNNNA NNNDNNIHGD DIDHHQTRLP  240
PPPPPPPPPI LDESDHPQTS FSERDEFPDE DEDEDEDDVD DKNGEERLGD DDDDDEEGED  300
TRNNDKIVED EQSVGDSEKT EENTKRVMRK RKRQKKFEMF RGFCEKIVNK MMAQQEQLHC  360
KILQDMVKRD EEKIAKEEAW KKQEFERLQK GLEVRAHEEA ISGDRQAKIL DCLKKFSTSS  420
SSSNILGSHH SLKETLENLN KVTNNITLSN NSSILTQSSI NAQLQTTSSC TTNDHNHAPL  480
VNHQTCPNIP TSPSNENVSL LSPISLDNPK LALPIMSSSS MDQAAPQNPN PVISSHNTLE  540
NRSDLKSIVG NGKNDTGRRW PRDEVLALIN IRCSLFNNNS GDVHQDREAF SKGPLWERIS  600
QKMMELGYKR NAKRCKEKWE NINKYFRKTK DMNKKRSIDS RTCPYFHQLN HLYSQGTLMG  660
PTDRPINLPG SPEHSSMAAF SEAQGGSITP VNGASATNTM HGCQGNQGVV QVPGFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328335RKRKRQKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675079.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A0K9QL430.0A0A0K9QL43_SPIOL; Uncharacterized protein
STRINGXP_010675079.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-48Trihelix family protein