PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_081320_zcno.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB_related

Protein Properties

Length: 1041aa MW: 115199 Da PI: 8.6757

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_081320_zcno.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.1e-08	42	77	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G + Wk++a + R+ +++ Bv4_081320_zcno.t1 42 QWSKHEIERFYEAYRKYGQE-WKKVAGVVR-SRSIEMV 77 6*****************.******9.9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.14E-8	39	86	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-6	42	82	IPR001005	SANT/Myb domain
CDD	cd00167	2.41E-4	43	77	No hit	No description
Pfam	PF06584	2.3E-27	572	672	IPR033471	DIRP domain
SMART	SM01135	1.2E-42	572	673	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1041 aa Download sequence Send to blast
MAPAKKSKSV NKGFTSASDS SPSKDEKSKQ KKRKLSDMLG PQWSKHEIER FYEAYRKYGQ 60 EWKKVAGVVR SRSIEMVEAL YNMNRAYLSL PEGIASVAGL IAMMTDHYNV LAGSGSEKDS 120 EEPEIMARKI QKKLKAKALL DSSRDDSRRQ YTGSSDGCLS LLKHCGNGIR PHFPVRKRTP 180 RIPVSCLDVH PNKKSRVSAL KANDGGVSHG DLLLKEAHQY PNSPHGSQTS RRTDNIRCSH 240 VSARDEIIAQ FPVLKTRTGG FGGDEESKEG SLGHNEDKIG NLARDSADSG RYALADYKKG 300 KKGKKAEVHH SEATLFDDIR EAYKYADKGP RRNGSDGKGA KICKSTSEGE RKRSKKLTFE 360 DELAACDALK ALAEMSSMMP YLAAEPASAV EDAGESMSGR DAMVNGVSRS DVALSDEKVS 420 GKLKNKHISQ GSKVWKAESP TDFSVKQEEK LSVADNEVKS ADSSEQISAV SKRCKSSLRS 480 PDVSSTNDPR LGETEVAVSS EQIANQVVNL TRRKNRRKRD RALLLKDSDY APSGCSNNGL 540 AIIQDEVQDV KRKLSNCLSF HEVRRWCVYE WFYSAIDYPW FAKREFTEYL IHAGLGHIPR 600 LTRAELGFIR STLGKPRRFC DHFLQKEREK LKQYRESVRT HYTNLRAGIG EGLPSDLACP 660 LLVGQQVVAI HPKTRECHNG SVLTVDHDNC LVQFHRPDLG VELVMDIDCM PLNPLENMPE 720 ALRRRKMLSD YWHVQVPKVN EAIMPVSEEH TKIVDHRFHV PSFNPSIANN MKVKPACLSS 780 LAKVIGNGSF KTETQNQSCN MAHMQFQEGH VRPIPGLTMG SDRKVFDQSS ACPKNLPPWP 840 LPVTDSVPLN ETMHYSNHSA FSCQETASNV AEIVEGSRDK AQNMVDTAIK AMSIMEEGED 900 AFGRISEALA CNGKAESAAT FRTSIISSSN TFRGSLPHQN PVASCTPQPK LACDASSVQP 960 IGDSASNDLR VPSDLITSCV ATLLMIQTCT ERQYPPAEVA QILDNAATSL HPCCPQNLSI 1020 YREIQMCMGR IKTQILALVP T

Sequence ? help Back to Top

Protein Sequence Length: 1041 aa Download sequence Send to blast

MAPAKKSKSV NKGFTSASDS SPSKDEKSKQ KKRKLSDMLG PQWSKHEIER FYEAYRKYGQ  60
EWKKVAGVVR SRSIEMVEAL YNMNRAYLSL PEGIASVAGL IAMMTDHYNV LAGSGSEKDS  120
EEPEIMARKI QKKLKAKALL DSSRDDSRRQ YTGSSDGCLS LLKHCGNGIR PHFPVRKRTP  180
RIPVSCLDVH PNKKSRVSAL KANDGGVSHG DLLLKEAHQY PNSPHGSQTS RRTDNIRCSH  240
VSARDEIIAQ FPVLKTRTGG FGGDEESKEG SLGHNEDKIG NLARDSADSG RYALADYKKG  300
KKGKKAEVHH SEATLFDDIR EAYKYADKGP RRNGSDGKGA KICKSTSEGE RKRSKKLTFE  360
DELAACDALK ALAEMSSMMP YLAAEPASAV EDAGESMSGR DAMVNGVSRS DVALSDEKVS  420
GKLKNKHISQ GSKVWKAESP TDFSVKQEEK LSVADNEVKS ADSSEQISAV SKRCKSSLRS  480
PDVSSTNDPR LGETEVAVSS EQIANQVVNL TRRKNRRKRD RALLLKDSDY APSGCSNNGL  540
AIIQDEVQDV KRKLSNCLSF HEVRRWCVYE WFYSAIDYPW FAKREFTEYL IHAGLGHIPR  600
LTRAELGFIR STLGKPRRFC DHFLQKEREK LKQYRESVRT HYTNLRAGIG EGLPSDLACP  660
LLVGQQVVAI HPKTRECHNG SVLTVDHDNC LVQFHRPDLG VELVMDIDCM PLNPLENMPE  720
ALRRRKMLSD YWHVQVPKVN EAIMPVSEEH TKIVDHRFHV PSFNPSIANN MKVKPACLSS  780
LAKVIGNGSF KTETQNQSCN MAHMQFQEGH VRPIPGLTMG SDRKVFDQSS ACPKNLPPWP  840
LPVTDSVPLN ETMHYSNHSA FSCQETASNV AEIVEGSRDK AQNMVDTAIK AMSIMEEGED  900
AFGRISEALA CNGKAESAAT FRTSIISSSN TFRGSLPHQN PVASCTPQPK LACDASSVQP  960
IGDSASNDLR VPSDLITSCV ATLLMIQTCT ERQYPPAEVA QILDNAATSL HPCCPQNLSI  1020
YREIQMCMGR IKTQILALVP T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	356	ERKRSKKL
2	512	519	RKNRRKRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010674728.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A0K9RR56	0.0	A0A0K9RR56_SPIOL; Uncharacterized protein
STRING	XP_010674727.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-128	DNA binding