PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_079310_oref.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 991aa MW: 111722 Da PI: 4.8915 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Bv4_079310_oref.t1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Bv4_079310_oref.t1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.7E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 9.28E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 5.39E-21 | 33 | 109 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.30E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.7E-60 | 407 | 650 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 991 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKE ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRQR KRKRKGIDYN AEIPFEKRPP SGFYDVAEED RPVEQPKFPT 240 TIEELEGERR ADREARLRKQ DIAKNKIAQR QDAPAAIVQA NKLNDPETVR KRSKLMLPPP 300 QISDQELEEI ARMGYASDLL VGNQELAEGS GATHALLANY SQTPRQGMTP MRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGDNPEL HPSDFSGVTP KKRDVQTPNP MLTPLTTPGA 420 TGLTPRIGMT PSRDGNSFGM TPKGTPIRDE LHINEEMDMH DSAKLELRRQ AELKRNLRMG 480 LSGLPEPKNE YEVVVHPEPE DTEEPEEKIE EDMSDRIARE KAEEEARYQA LLRKRSKVLQ 540 RELPRPPAAS VELIRRSLMR ADEDKSSFAP PTDIEQADEL VRKELLSLLE HDNAKYPLND 600 KEQKKGGKRS ANVVPVIEDF EQEELKEAGS FIEEEAQYLR VAMGHQEETL DDFVEAHTTC 660 LNDLMYFPTR SAYGLSSVAG TVEKLAALQN EFDNVKRRMD DDNKKAQRLE KKIDVLTHGY 720 KMRADKLKTQ IELTFKQMNT AGTELDCFLA LQRQEKLAAS FRIKGLWEEV QKQKELEKTL 780 QKRYGDLVAE LERAQQLVNF YKIEAQKQEE MDAKKHAEEL AEKAAANQAS TRGSEAPEPE 840 STMEIDSSDD AKPNQDGEVA EAASGASLEN GMHVDGDVTS ITDTQSASLA SDEVHQQDSS 900 NDFEAVKEQN MDTTKIPDGV SENMGNAVEE AVESNGFAVG EPVSISKVET QRVDGDLGSP 960 INREEGNEPT VEADADKPVE KVENGASDEQ V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 792 | 3 | 796 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDVRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010674469.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A0K9RDE1 | 0.0 | A0A0K9RDE1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010674469.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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