PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_079110_tgus.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 37804.1 Da PI: 4.403 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.8 | 2.2e-49 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel ++yLk+kv gk+l e+i+ev++y++ PwdLp + ++k+++ +wyfF++r+kky++g r+nrat+ gyWk+tg+d Bv4_079110_tgus.t1 10 LPPGFRFHPTDEELFMYYLKRKVLGKSLGP-EMISEVEVYRFAPWDLPaMtCLKTRDLNWYFFCPRAKKYPNGGRANRATECGYWKSTGND 99 79*************************988.89***************5247778888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++v+ +++ vg ktLvf++g+apkge+tdWvmheyrle Bv4_079110_tgus.t1 100 RTVTY-NSRPVGKIKTLVFHRGKAPKGERTDWVMHEYRLE 138 *****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-60 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.426 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MEELLGGKSL PPGFRFHPTD EELFMYYLKR KVLGKSLGPE MISEVEVYRF APWDLPAMTC 60 LKTRDLNWYF FCPRAKKYPN GGRANRATEC GYWKSTGNDR TVTYNSRPVG KIKTLVFHRG 120 KAPKGERTDW VMHEYRLEDK VLAERGVPQD CYVICKIYEK SGLGPKNGEN YGARFVEEEW 180 DSDIDDDNVQ QGDLGLTLQD VGGGCNVDSP DGSFSALTST MGTPNVASPM DTSTLIGAAA 240 NVGPPNIFSA FGGNPHISAA SADTPTTAAS VGTLNVTAAS AGALGAFAEG SHSAAAAAPE 300 EDELDRLLSY FTEDVGDIFK GLEDLTDTSA QTDADWNDLF IEMDDLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-47 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-47 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010674451.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 9e-80 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A0K9RG69 | 1e-136 | A0A0K9RG69_SPIOL; Uncharacterized protein | ||||
STRING | XP_010674451.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 5e-86 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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