PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_078530_skuh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 920aa    MW: 104690 Da    PI: 7.4984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_078530_skuh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10391436146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r+ WT++Ed+ l+ ++++ G ++W+ Ia+++ ++Rt+ qc  r+q 
  Bv4_078530_skuh.t1 391 RDIWTPDEDKHLLLLIQKNGIHNWSYIAEKLETNRTPFQCLVRYQR 436
                         567**************************************99995 PP
2Myb_DNA-binding44.43.8e-14445490248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT+eEd +l  av+ +G  +W ++a+ +  gRt+ qc +rw k l
  Bv4_078530_skuh.t1 445 RDWTEEEDTKLRSAVESFGESNWQAVASVLE-GRTGTQCSNRWKKTL 490
                         57*****************************.***********9975 PP
3Myb_DNA-binding39.61.2e-12498542247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         g+W+  Ed++l  a +++G ++W +Ia+ ++ gRt  qc++rw + 
  Bv4_078530_skuh.t1 498 GKWSISEDKRLRVAATLFGRKSWYRIAQFVP-GRTQVQCRERWVNI 542
                         79*****************************.***********986 PP
4Myb_DNA-binding48.12.6e-15550593247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         g+WT+e+d +l++a++++G   W+++a+++   Rt++qc+ rw  +
  Bv4_078530_skuh.t1 550 GKWTEEDDMRLKEAIAEYGYC-WSKVAACVC-SRTDNQCRRRWKVL 593
                         89*****************99.*********.***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.1290387IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-8293310IPR009057Homeodomain-like
PROSITE profilePS500905.401349385IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.7E-8356398IPR009057Homeodomain-like
SuperFamilySSF466891.64E-16369435IPR009057Homeodomain-like
PROSITE profilePS500909.582386438IPR017877Myb-like domain
SMARTSM007174.8E-7390440IPR001005SANT/Myb domain
CDDcd001679.41E-6394438No hitNo description
PfamPF139212.1E-8394442No hitNo description
Gene3DG3DSA:1.10.10.608.0E-15399444IPR009057Homeodomain-like
SuperFamilySSF466894.56E-19424490IPR009057Homeodomain-like
PROSITE profilePS5129420.885439494IPR017930Myb domain
SMARTSM007171.1E-13443492IPR001005SANT/Myb domain
PfamPF002493.6E-13445489IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-17445493IPR009057Homeodomain-like
CDDcd001671.06E-11447490No hitNo description
PROSITE profilePS500909.825492543IPR017877Myb-like domain
SuperFamilySSF466895.87E-25494590IPR009057Homeodomain-like
SMARTSM007172.6E-10496545IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-19498549IPR009057Homeodomain-like
PfamPF002491.7E-11498543IPR001005SANT/Myb domain
CDDcd001671.44E-8499543No hitNo description
PROSITE profilePS5129422.471544598IPR017930Myb domain
SMARTSM007172.4E-15548596IPR001005SANT/Myb domain
PfamPF002492.7E-14550592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-17550592IPR009057Homeodomain-like
CDDcd001672.18E-11551594No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MGQYDFEEEL CDSDADDYLQ DEIRALSLAC MPYVTSDVGG NPSTSSRGTN YGEFFEDDDD  60
LDLVRSIKEQ YGSEIDISGP LSMKPLTSLP PVSSDDDDDD FETLRAIKTR FSQYCGDDVG  120
DAVESKNATC IDKPLQDDAI GTSMGSEYLD VHEDVGRDPC DPAENVETSS YSSSFPTSAQ  180
TFIEAIKKNR SCQRFIRKKM LHVEARMEEV KELQKRLKTL GDFQVQCKKK IGRALSQKQD  240
ARIQLISTQK QRANVKGSEK NVSAMIFGPL ENSHVARYKT ALENFPLSFQ REKWSKGETQ  300
HLEKEIVKQF QESLFQRSAD VLSALEEPGF ANGLDDMISS ITNLDITPEI IQEFSRKVDW  360
NELASGPRFT RRSGTECEAR WLNYENRLIN RDIWTPDEDK HLLLLIQKNG IHNWSYIAEK  420
LETNRTPFQC LVRYQRSLNA SILKRDWTEE EDTKLRSAVE SFGESNWQAV ASVLEGRTGT  480
QCSNRWKKTL LPARQKVGKW SISEDKRLRV AATLFGRKSW YRIAQFVPGR TQVQCRERWV  540
NILDPFLNHG KWTEEDDMRL KEAIAEYGYC WSKVAACVCS RTDNQCRRRW KVLFPNEVPL  600
LKAARDIKRA ALISNFVDRE SERPALGPSD FVHLPITDST LAEEIENVPN ARKKKSRKAH  660
PTRELASCRD QKERGLRKRK KIDRSPESNN DCDDARNNIG NGSSNNKKRR ASKSGSKKKK  720
HTGNLNIATE PKNSCKSTKS HDDREIEAWD IPIGTSLRRP RGVRVKEIPL IRNLGGSQAS  780
DIHDIHDTEM SATTFVHCSN QNNGPEILHG QSTSSDSQLR IHEEETLELS SIHTLLGKKK  840
SSKLQPRRPS AETILGEKNY VAMELRTSND DNETHSVNIT GSSKQKKSTL HIDQDIEWED  900
LPLASLFHGS VTRIQKRKSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-273595909155MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-273595909155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196217RKKMLHVEARMEEVKELQKRLK
2676680RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674389.10.0PREDICTED: snRNA-activating protein complex subunit 4
RefseqXP_010674390.10.0PREDICTED: snRNA-activating protein complex subunit 4
RefseqXP_010674392.10.0PREDICTED: snRNA-activating protein complex subunit 4
RefseqXP_010674393.10.0PREDICTED: snRNA-activating protein complex subunit 4
RefseqXP_010674394.10.0PREDICTED: snRNA-activating protein complex subunit 4
TrEMBLA0A0K9R9D00.0A0A0K9R9D0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010674389.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-166myb domain protein 4r1