PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_075270_cixt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 768aa    MW: 84211.3 Da    PI: 6.3547
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_075270_cixt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-32302359260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+ +C+vkkkvers+ d++++ei+Y+g Hnh+k
  Bv4_075270_cixt.t1 302 EDGYNWRKYGQKQVKGSEYPRSYYKCTHGDCQVKKKVERSH-DGQITEIIYKGAHNHSK 359
                         8****************************************.***************85 PP
2WRKY100.97.3e-32518575259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+vers++ +k+v++tYeg+Hnhe
  Bv4_075270_cixt.t1 518 DDGYRWRKYGQKVVKGNPNPRSYYKCTATGCTVRKHVERSSQSKKFVITTYEGKHNHE 575
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28288360IPR003657WRKY domain
PROSITE profilePS5081124.306296360IPR003657WRKY domain
SuperFamilySSF1182903.14E-25297360IPR003657WRKY domain
SMARTSM007745.2E-35301359IPR003657WRKY domain
PfamPF031061.5E-24302357IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-34502577IPR003657WRKY domain
SuperFamilySSF1182909.68E-28511577IPR003657WRKY domain
PROSITE profilePS5081136.024512577IPR003657WRKY domain
SMARTSM007745.9E-36517576IPR003657WRKY domain
PfamPF031069.0E-25518575IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MEDIKDGQDE WRDLVMSSNE LYPGFTPKNC GSDLEKEVES FSKFDLESTL SNGCHDESNS  60
SMVINDSGLI KNGMSIAERR ATKCGFNASK ICVPLFRCNS LLPSSNALCS PYVTVSSDSS  120
PHTLIDSPIL LPNSQLSPTT GTFASRRPDG DGHMSTSTSP AHVDKGSDGG SAMFKPCTDT  180
TSLACFHDVD NQVSSTGDLA ANINCQSLTS VHPPADFKIP LRLCNDVGMD NHDELLPDRK  240
LSGLTVNPKS STYQPCDSNI AACLQMPHEN GTSVQDDSGI RDYLDREQNE ISPYTGSVRI  300
AEDGYNWRKY GQKQVKGSEY PRSYYKCTHG DCQVKKKVER SHDGQITEII YKGAHNHSKP  360
QSYRKSTLGS STPFNEISKI GDGSGSSVKA NSGSVWRNIQ QGYTDVASDW KIDGLERTSP  420
TSVVTEASDP LSTTRGKQTG VLESAGTPEF SSTMASHEDD EEDAATKGNF VIAHECENEP  480
DLKRRKKDGC FVETTLGSRA VREPRVVLQL ESDVDIHDDG YRWRKYGQKV VKGNPNPRSY  540
YKCTATGCTV RKHVERSSQS KKFVITTYEG KHNHELPVAR NSSHANSGSG SLPVAATSTH  600
TVLTLPRNSH ISKPEPHVED LPLHLDTKME CGNEFLRPNF LGNIGSGTSV YPMKFPALPN  660
STSYGPFDLS SQHPAYASTI IPALPDISFP LPLGFSRSVA SYCNPDILYS SVQSSMYPGP  720
QLKQSDVKFL RPKQERKDDS FIETELHTID QTNTSSLLYN HVSGTFHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-30295578878Probable WRKY transcription factor 4
2lex_A1e-30295578878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673935.10.0PREDICTED: WRKY transcription factor SUSIBA2
RefseqXP_019104423.10.0PREDICTED: WRKY transcription factor SUSIBA2
RefseqXP_019104424.10.0PREDICTED: WRKY transcription factor SUSIBA2
RefseqXP_019104425.10.0PREDICTED: WRKY transcription factor SUSIBA2
TrEMBLA0A0K9RQN50.0A0A0K9RQN5_SPIOL; Uncharacterized protein
STRINGXP_010673935.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-81WRKY DNA-binding protein 34