PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_074840_wwrw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 623aa    MW: 70135.7 Da    PI: 6.5859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_074840_wwrw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-13570618147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r++WT+e ++ l ++v+++G++ Wk+I  t       Rt+ ++k++w++ 
  Bv4_074840_wwrw.t1 570 RKKWTPEQEDALRNGVQKFGKR-WKLILDTYSslfRDRTDVDLKDKWRNM 618
                         789*******************.*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.057567623IPR017930Myb domain
SMARTSM007171.9E-9569621IPR001005SANT/Myb domain
PfamPF002496.4E-10570618IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-13570620IPR009057Homeodomain-like
CDDcd116601.77E-15571620No hitNo description
SuperFamilySSF466891.48E-12572621IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MDEKIARWIL DFLLRTSIDE KIINGVLSCL PLPNNDSRLK KTILLRKIES ETINGVVSEK  60
ILELLEIIEE LDHRMGKLAS DLMKEAYCAV AVDCTVRFLE ENVAENGKYF EAVERVWRNR  120
VCRMEGLISE DSNRWLRDIE AAVWDSGVCE KIWRRNTRNE ALKAVKGYVK DAWKCIGPTY  180
LELVANLVRD EGEELRRGSS DAGGETVGSD NPCLELVASE GMQRSLTTPR RKHVAIKRRR  240
LRGAKISDAD EVAEESNDIS NHKLDEAQEP LQLNSMELDA GVSETHPDVS RAAQNLSFSK  300
ARDSTSNVNE VENQTGPEIH AVPEVSRVQE APHSSNMEPH AVTDPLLETL STKATDTTSN  360
VKAVGNQTGL GMHATPEVIR VQEALNSSSR ELHAAVTDPL PKALQIATLA SRGVTVNKGT  420
GKENQTGSDT RAIPEAGNSS HDVFAAFEYV SSKMTTRNKR NGALLDNQKQ LGICAPREST  480
DNKSKNIEKK DDCTRDVLGN ETHDPPEQNK RKRSLMEPNG TSHTLEWGES ADSLNQDLDA  540
GPRSSLSQRR CRVSPLKQYE DKKFPWRRER KKWTPEQEDA LRNGVQKFGK RWKLILDTYS  600
SLFRDRTDVD LKDKWRNMMR YHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229239RRKHVAIKRRR
2236240KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673889.10.0PREDICTED: uncharacterized protein LOC104890194
TrEMBLA0A0K9QSX40.0A0A0K9QSX4_SPIOL; Uncharacterized protein
STRINGXP_010673889.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-18TRF-like 5