PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_074300_qyfi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YC
Protein Properties Length: 269aa    MW: 29668 Da    PI: 4.5555
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_074300_qyfi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC50.74e-166861898
               NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                        ++++P a+ikki+++dedv +++  +P l+ska e f+ +l  r++  +     +t+    ++++v + ++fdfl +iv +
  Bv4_074300_qyfi.t1  6 DTRFPAAKIKKIMQSDEDVGKMALPVPLLVSKALERFLQDLCDRTYEITLTRGAKTISSLHLKQCVHSFNVFDFLKEIVCK 86
                        5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-22272IPR009072Histone-fold
SuperFamilySSF471139.29E-19388IPR009072Histone-fold
PfamPF008084.6E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKKKLDTRFP AAKIKKIMQS DEDVGKMALP VPLLVSKALE RFLQDLCDRT YEITLTRGAK  60
TISSLHLKQC VHSFNVFDFL KEIVCKVPDL GDSAAGGDDQ QVTRRRKLAD YDESDGGEES  120
KRSKLDAAGH TNSGGRGRGR GRGRGRGRGS RGTTCDKFED DPDMHDMQAM MLIEGDESRE  180
STDCALPVEN PEASAINIDL NMNLEADGKT SSTLVLGLDK TAPESSITET THDEFSTWPL  240
SEMGTIAIDN IQLGSFNQNI EEDENYDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A5e-21271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137147RGRGRGRGRGR
2139148RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673824.10.0PREDICTED: dr1-associated corepressor
TrEMBLA0A1R3FZ923e-73A0A1R3FZ92_COCAP; Transcription factor CBF/NF-Y/archaeal histone
STRINGXP_010673824.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-55nuclear factor Y, subunit C11