PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_073630_adyh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SRS
Protein Properties Length: 482aa    MW: 48785.1 Da    PI: 8.1588
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_073630_adyh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.11.1e-642424183153
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.................aeaaskrkr 76 
                          gt++CqdCGnqakkdC+h+RCRtCC+srgfdC+thvkstWvpaa+rrerq +   as  +  s                  +++ +k++r
  Bv4_073630_adyh.t1 242 GGTTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPAARRRERQIMGVGASPGTHVSGgggggggggggggassgSTSGAKKPR 332
                         5789**********************************************988777766555554899**********9987777778888 PP

              DUF702  77 elkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                           +s+++ a++s + +s+++++++etss          lP +v+++avf+cvrv++vddge+e+aYq+ v+igGhvfkG+LydqG+e
  Bv4_073630_adyh.t1 333 LISSQNT-ATTSHTSNSNTPPRSFETSSshqdasfkesLPGQVKAPAVFKCVRVTAVDDGEDEFAYQAMVKIGGHVFKGFLYDQGTE 418
                         7655544.44444446666788888888899******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-61244418IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.3E-26246288IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-28370416IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MLAVVATTRR LASDSGAFAD WVASSASNAA DKSNDLSLGF NAGPNPPTGP APSSGNTLWP  60
TASRAAALGY GIPPEMGMFV VAPASTFHHH QQQQQHESSL MMDSHSHHHH HHHFSTTRDG  120
GGVGGVNGVN NAGTALGVGV GVGVIPLLTT GPCLNMGGGG GGDNSNSNSN NNSSNNNNTL  180
DGHDGFMGRN RAGAIQLWQT HQQQMGGNHN NYPKKSINFD PISGPNLLHS SSTSTMGCGG  240
GGGTTTCQDC GNQAKKDCSH RRCRTCCRSR GFDCSTHVKS TWVPAARRRE RQIMGVGASP  300
GTHVSGGGGG GGGGGGGGGA SSGSTSGAKK PRLISSQNTA TTSHTSNSNT PPRSFETSSS  360
HQDASFKESL PGQVKAPAVF KCVRVTAVDD GEDEFAYQAM VKIGGHVFKG FLYDQGTEPR  420
DGFPNLSELH LGGGASSSAG GGGGGRNGGA SSSSPLLDPS DVYGGSGTGG LLGGSTYGNT  480
IN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673751.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A438KG411e-130A0A438KG41_VITVI; protein lateral ROOT PRIMORDIUM 1
STRINGXP_010673751.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-54Lateral root primordium (LRP) protein-related