PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_073430_tehx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 456aa    MW: 50934.4 Da    PI: 6.4496
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_073430_tehx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS472.42.4e-144474531374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++vs+g+l +a+ +L+++s+la+pdgd+mqR+aayf+e La+r+++s+++l++al+ ++ +   +see+ a+klf+e++P+l
  Bv4_073430_tehx.t1  47 LIHLLLTCANHVSTGSLDNANLALEQISHLATPDGDTMQRIAAYFAESLAERILKSWPGLFRALNFTRMP--VVSEEILARKLFFELCPFL 135
                         689***************************************************************9999..6****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k++++++Nq+I +a+ege++vHiiD+++s+++QW+aL+qaL++Rpegpp+lRiTgv++    +ke le++++rL++ Ae+l++pf+fn+ v
  Bv4_073430_tehx.t1 136 KLAFVVTNQTIIDAMEGEKMVHIIDLNASEPAQWIALIQALSARPEGPPHLRITGVHQ----QKEVLEQVAHRLTDEAEKLDLPFQFNP-V 221
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........................................desvsles..erdevLklv 231
                         +++le+l++e+Lrvk+gEala+++vlqlh+ll                                           +s++   + d +L ++
  Bv4_073430_tehx.t1 222 VSKLENLDIEKLRVKTGEALAISSVLQLHTLLasddetqrkssslallnhvngaatnvnrrsspsndsasssP--TSINAsaKMDGFLAAL 310
                         99*****************************************************************998543..33333448899***** PP

                GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                         ++lsPk++v++eq+++hn++ ++er++eal++y+alfd+le++lpr+s er+ vE++llg ei+n++aceg errerhe+l +W +rl++a
  Bv4_073430_tehx.t1 311 WGLSPKIMVIAEQDSNHNGSGLMERLSEALYFYAALFDCLESTLPRTSVERRRVEKMLLGDEIKNIIACEGGERRERHEKLDRWMQRLDMA 401
                         ******************************************************************************************* PP

                GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         GF++vpls+  + qa++ll+ ++ dgyr++ee+g+++++W+drpL+svSaWr
  Bv4_073430_tehx.t1 402 GFGSVPLSYIGMLQARHLLQGCSCDGYRIKEENGCVIICWQDRPLYSVSAWR 453
                         ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.60721433IPR005202Transcription factor GRAS
PfamPF035148.3E-14247453IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGPMLQDDGS SVTSSSPLQF FSRMSPNLGS PHPWLRELKP EERGLYLIHL LLTCANHVST  60
GSLDNANLAL EQISHLATPD GDTMQRIAAY FAESLAERIL KSWPGLFRAL NFTRMPVVSE  120
EILARKLFFE LCPFLKLAFV VTNQTIIDAM EGEKMVHIID LNASEPAQWI ALIQALSARP  180
EGPPHLRITG VHQQKEVLEQ VAHRLTDEAE KLDLPFQFNP VVSKLENLDI EKLRVKTGEA  240
LAISSVLQLH TLLASDDETQ RKSSSLALLN HVNGAATNVN RRSSPSNDSA SSSPTSINAS  300
AKMDGFLAAL WGLSPKIMVI AEQDSNHNGS GLMERLSEAL YFYAALFDCL ESTLPRTSVE  360
RRRVEKMLLG DEIKNIIACE GGERRERHEK LDRWMQRLDM AGFGSVPLSY IGMLQARHLL  420
QGCSCDGYRI KEENGCVIIC WQDRPLYSVS AWRCRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-72314552380Protein SCARECROW
5b3h_D1e-72314552380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673719.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0K9RSV50.0A0A0K9RSV5_SPIOL; Uncharacterized protein
STRINGXP_010673719.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]