PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_072620_yruo.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 397aa MW: 43285.8 Da PI: 5.8761 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.6e-14 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ G g+W+ +ar g+ R++k+c++rw +yl Bv4_072620_yruo.t1 37 KGLWSPEEDDKLMNYMLTNGQGCWSDVARNAGLLRCGKSCRLRWINYL 84 678*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 5.9e-16 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+++++ +lG++ W+ Ia++++ gRt++++k++w++ Bv4_072620_yruo.t1 90 RGAFSPQEEDLIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 133 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.838 | 32 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-27 | 35 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-22 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-8 | 40 | 84 | No hit | No description |
PROSITE profile | PS51294 | 25.245 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 90 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.94E-11 | 92 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 92 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MRKPTDPASK GNSNGNSNSN SNGGCTSTTN GSIKLRKGLW SPEEDDKLMN YMLTNGQGCW 60 SDVARNAGLL RCGKSCRLRW INYLRPDLKR GAFSPQEEDL IIHLHSLLGN RWSQIAARLP 120 GRTDNEIKNF WNSTVKKRLK SSSNSSSSPN ASDSSLSTEP RDGMVGGFMA MQDPCSIMAM 180 YLNNNSAASP TSSSLQSMVP LHHHGIMDPL SNMVNNSTTT TTATATATAT TLDVSACGNG 240 YMNHASSCMS MSSQGHGMCN VGDDGLMICG SYGMLGGQNY NYGILQGELS IPSLETISIE 300 ENTQVSEDIV FGSNTSNNNH NFHNNNNDNH FDHNHHIIST INNNTNPFNM AKKFEIAIPG 360 VGNNWEGGEN DSRLGEWDLE ELMKDVSSFP FIDYQVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 35 | 141 | 5 | 110 | B-MYB |
1h8a_C | 2e-26 | 34 | 139 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010673636.1 | 0.0 | PREDICTED: transcription factor MYB86 | ||||
TrEMBL | A0A0K9RB90 | 1e-144 | A0A0K9RB90_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673636.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 1e-67 | myb domain protein 83 |