PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_071040_cjuq.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34598.8 Da PI: 8.3639 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.6e-15 | 33 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdell ++ + + W+t++++ g+ R++k+c++rw +yl Bv4_071040_cjuq.t1 33 KGPWTAEEDELLRSYILTHQNQngkvgGWRTVPQRAGLLRCGKSCRLRWMNYL 85 79***********************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.4e-16 | 91 | 136 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Bv4_071040_cjuq.t1 91 RGLFSSDEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 136 7889******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.288 | 28 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.6E-25 | 30 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-9 | 32 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-13 | 33 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 34 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-7 | 35 | 85 | No hit | No description |
PROSITE profile | PS51294 | 25.131 | 86 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 90 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 91 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 93 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.12E-12 | 94 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MRKPSPPSPS STTRRLQAGC SSSSSKVGIK MKKGPWTAEE DELLRSYILT HQNQNGKVGG 60 WRTVPQRAGL LRCGKSCRLR WMNYLRPNLR RGLFSSDEED LILRLHRLLG NRWALIAGRI 120 PGRTDNEIKN YWNTHLSKKL LSLGIDPLTH KPLNPPPING ATIATTARKN IHHEFVTAAT 180 AHANPNHWND TNNIPLPPNH ITAAATTDLL ATSSTAIRPI PHQNDLPYHD NDYMTNYVYK 240 HNKDDNYDHN IDDVDHGVFS SFLDSLINYD DMSSEPTFHH NDHEHEDPLH QCIQSPLNTP 300 PLTPHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 33 | 140 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019104346.1 | 0.0 | PREDICTED: transcription repressor MYB6 isoform X2 | ||||
TrEMBL | A0A2I4DQK7 | 5e-72 | A0A2I4DQK7_JUGRE; transcription repressor MYB5-like | ||||
STRING | XP_010673475.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-63 | myb domain protein 5 |