PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_070980_cnzx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 262aa    MW: 29618.3 Da    PI: 8.1999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_070980_cnzx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-192878155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s++ GVr+++ +g+WvAeI+  +   ++ r++lg+f+taeeAa+a+++a+  l+g
  Bv4_070980_cnzx.t1 28 SKFVGVRQRP-SGKWVAEIKNTT---QKIRIWLGTFDTAEEAARAYDEAACLLRG 78
                        79********.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-142878IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-202887IPR016177DNA-binding domain
PROSITE profilePS5103219.5332986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-282986IPR001471AP2/ERF domain
SMARTSM003805.7E-372992IPR001471AP2/ERF domain
CDDcd000182.34E-323085No hitNo description
PRINTSPR003671.6E-83041IPR001471AP2/ERF domain
PRINTSPR003671.6E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEFQYQQPQH KERKLKETSH SKTKSSKSKF VGVRQRPSGK WVAEIKNTTQ KIRIWLGTFD  60
TAEEAARAYD EAACLLRGSN TRTNFVTSPS SNNANSALSR RIRNLVNQKK KLINDRQPPP  120
TAISSVKPMD DGDVANPSAS LVVNQAVSFT GQMLEENVYR PDLSGHQFDY SWAFPEQFPP  180
PISDDFGIFT KQLNFTTLAD VEMVSNANEV AMLEFERIKV ERQISASLYA MNGVNDYLQN  240
VFNDPTAPSW DPPMLYHNFC LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1525981081Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673981.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLA0A0K9RTC51e-114A0A0K9RTC5_SPIOL; Uncharacterized protein
STRINGXP_010673981.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-34related to AP2 11