PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv3_069930_zsar.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 238aa MW: 26427.7 Da PI: 6.2215 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 138.1 | 2.4e-43 | 43 | 143 | 2 | 99 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 l+sf e + + df+nh+lPlarik+i+k+d++v+misa+aPvll++ace+fi +l+lrsw+ +ee+kr+tl+k+di+aa++ td f Bv3_069930_zsar.t1 43 LRSFSEIKhqeSAYTDDFRNHSLPLARIKRIMKSDDNVRMISADAPVLLARACEMFIQDLSLRSWNCTEESKRKTLQKADISAALSTTDLF 133 55665433212455789************************************************************************** PP NF-YC 90 dflvdivprd 99 dflvd vpr+ Bv3_069930_zsar.t1 134 DFLVDLVPRE 143 ********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.18E-32 | 13 | 136 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-22 | 64 | 127 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.8E-33 | 65 | 142 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MEPHWSFYYS DHQHQHLLVN NTPHSNQQQP SASGGSNLLQ QQLRSFSEIK HQESAYTDDF 60 RNHSLPLARI KRIMKSDDNV RMISADAPVL LARACEMFIQ DLSLRSWNCT EESKRKTLQK 120 ADISAALSTT DLFDFLVDLV PREKPLSSAM PPVNLPIISS MGNANSSLGA IHNPQHLQQP 180 EGCCLGEYQA AAGLTMGVQM QLVQNDQVDG GGYSSTKNIQ GGWPNCLAYQ PAWPPPDI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-43 | 52 | 142 | 5 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694015.1 | 1e-179 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A0K9RLI3 | 3e-78 | A0A0K9RLI3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694015.1 | 1e-179 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-47 | nuclear factor Y, subunit C3 |